Construct: ORF ccsbBroadEn_03923
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017886.1_s300c1, BRDN0000394878
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC4 (64101)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64101 | LRRC4 | leucine rich repeat contain... | NM_022143.5 | 100% | 100% | |
| 2 | human | 64101 | LRRC4 | leucine rich repeat contain... | XM_011516461.3 | 100% | 100% | |
| 3 | mouse | 192198 | Lrrc4 | leucine rich repeat contain... | NM_138682.2 | 92.8% | 97.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2028
- ORF length:
- 1959
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGCTCTTG TGGCAGGTAA CTGTGCACCA CCACACCTGG AATGCCATCC 121 TGCTCCCGTT CGTCTACCTC ACGGCGCAAG TGTGGATTCT GTGTGCAGCC ATCGCTGCTG 181 CCGCCTCAGC CGGGCCCCAG AACTGCCCCT CCGTCTGCTC GTGCAGTAAC CAGTTCAGCA 241 AGGTGGTGTG CACGCGCCGG GGCCTCTCCG AGGTCCCGCA GGGTATTCCC TCGAACACCC 301 GGTACCTCAA CCTCATGGAG AACAACATCC AGATGATCCA GGCCGACACC TTCCGCCACC 361 TCCACCACCT GGAGGTCCTG CAGTTGGGCA GGAACTCCAT CCGGCAGATT GAGGTGGGGG 421 CCTTCAACGG CCTGGCCAGC CTCAACACCC TGGAGCTGTT CGACAACTGG CTGACAGTCA 481 TCCCTAGCGG GGCCTTTGAA TACCTGTCCA AGCTGCGGGA GCTCTGGCTT CGCAACAACC 541 CCATCGAAAG CATCCCCTCT TACGCCTTCA ACCGGGTGCC CTCCCTCATG CGCCTGGACT 601 TGGGGGAGCT CAAGAAGCTG GAGTATATCT CTGAGGGAGC TTTTGAGGGG CTGTTCAACC 661 TCAAGTATCT GAACTTGGGC ATGTGCAACA TTAAAGACAT GCCCAATCTC ACCCCCCTGG 721 TGGGGCTGGA GGAGCTGGAG ATGTCAGGGA ACCACTTCCC TGAGATCAGG CCTGGCTCCT 781 TCCATGGCCT GAGCTCCCTC AAGAAGCTCT GGGTCATGAA CTCACAGGTC AGCCTGATTG 841 AGCGGAATGC TTTTGACGGG CTGGCTTCAC TTGTGGAACT CAACTTGGCC CACAATAACC 901 TCTCTTCTTT GCCCCATGAC CTCTTTACCC CGCTGAGGTA CCTGGTGGAG TTGCATCTAC 961 ACCACAACCC TTGGAACTGT GATTGTGACA TTCTGTGGCT AGCCTGGTGG CTTCGAGAGT 1021 ATATACCCAC CAATTCCACC TGCTGTGGCC GCTGTCATGC TCCCATGCAC ATGCGAGGCC 1081 GCTACCTCGT GGAGGTGGAC CAGGCCTCCT TCCAGTGCTC TGCCCCCTTC ATCATGGACG 1141 CACCTCGAGA CCTCAACATT TCTGAGGGTC GGATGGCAGA ACTTAAGTGT CGGACTCCCC 1201 CTATGTCCTC CGTGAAGTGG TTGCTGCCCA ATGGGACAGT GCTCAGCCAC GCCTCCCGCC 1261 ACCCAAGGAT CTCTGTCCTC AACGACGGCA CCTTGAACTT TTCCCACGTG CTGCTTTCAG 1321 ACACTGGGGT GTACACATGC ATGGTGACCA ATGTTGCAGG CAACTCCAAC GCCTCGGCCT 1381 ACCTCAATGT GAGCACGGCT GAGCTTAACA CCTCCAACTA CAGCTTCTTC ACCACAGTAA 1441 CAGTGGAGAC CACGGAGATC TCGCCTGAGG ACACAACGCG AAAGTACAAG CCTGTTCCTA 1501 CCACGTCCAC TGGTTACCAG CCGGCATATA CCACCTCTAC CACGGTGCTC ATTCAGACTA 1561 CCCGTGTGCC CAAGCAGGTG GCAGTACCCG CGACAGACAC CACTGACAAG ATGCAGACCA 1621 GCCTGGATGA AGTCATGAAG ACCACCAAGA TCATCATTGG CTGCTTTGTG GCAGTGACTC 1681 TGCTAGCTGC CGCCATGTTG ATTGTCTTCT ATAAACTTCG TAAGCGGCAC CAGCAGCGGA 1741 GTACAGTCAC AGCCGCCCGG ACTGTTGAGA TAATCCAGGT GGACGAAGAC ATCCCAGCAG 1801 CAACATCCGC AGCAGCAACA GCAGCTCCGT CCGGTGTATC AGGTGAGGGG GCAGTAGTGC 1861 TGCCCACAAT TCATGACCAT ATTAACTACA ACACCTACAA ACCAGCACAT GGGGCCCACT 1921 GGACAGAAAA CAGCCTGGGG AACTCTCTGC ACCCCACAGT CACCACTATC TCTGAACCTT 1981 ATATAATTCA GACCCATACC AAGGACAAGG TACAGGAAAC TCAAATATTG CCAACTTTCT 2041 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac