Construct: ORF ccsbBroadEn_03942
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001454.1_s300c1, BRDN0000386128
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZMAT3 (64393)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64393 | ZMAT3 | zinc finger matrin-type 3 | NM_022470.4 | 100% | 100% | |
| 2 | human | 64393 | ZMAT3 | zinc finger matrin-type 3 | XM_011513073.2 | 100% | 100% | |
| 3 | human | 64393 | ZMAT3 | zinc finger matrin-type 3 | NM_152240.3 | 99.6% | 99.6% | 655_656insCAG |
| 4 | human | 64393 | ZMAT3 | zinc finger matrin-type 3 | XM_005247706.3 | 99.6% | 99.6% | 655_656insCAG |
| 5 | mouse | 22401 | Zmat3 | zinc finger matrin type 3 | NM_009517.2 | 84% | 86.5% | (many diffs) |
| 6 | mouse | 22401 | Zmat3 | zinc finger matrin type 3 | XM_006535441.3 | 84% | 86.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 933
- ORF length:
- 867
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT CCTCTTGCAA CACGCCGTGC TTCCTCCACC TAAGCAGCCC TCACCCTCGC 121 CTCCTATGTC AGTGGCCACC AGGTCTACAG GAACCTTGCA GCTTCCACCA CAGAAGCCTT 181 TTGGGCAGGA GGCTTCCTTG CCTCTTGCAG GGGAAGAAGA GTTATCGAAG GGAGGGGAGC 241 AAGACTGTGC CCTGGAGGAG CTATGTAAGC CCCTGTACTG CAAACTCTGC AATGTCACCT 301 TGAACTCTGC ACAGCAAGCC CAGGCTCATT ATCAGGGTAA AAATCATGGT AAGAAACTCC 361 GAAATTACTA TGCAGCAAAT AGCTGTCCTC CTCCTGCTAG AATGAGCAAT GTGGTCGAGC 421 CTGCAGCTAC TCCAGTTGTT CCAGTCCCTC CGCAGATGGG CTCCTTTAAG CCAGGAGGCC 481 GAGTGATCCT GGCCACGGAG AATGATTACT GTAAGCTCTG TGATGCCTCC TTCAGTTCCC 541 CAGCTGTGGC TCAGGCTCAC TATCAAGGGA AGAATCATGC CAAGAGGCTG CGGCTGGCGG 601 AAGCTCAGAG TAACTCATTC TCGGAATCCT CAGAGCTGGG TCAACGGCGG GCCAGGAAAG 661 AAGGGAATGA GTTTAAGATG ATGCCTAACA GGAGAAATAT GTATACAGTA CAGAATAATT 721 CAGCAGGTCC TTACTTCAAT CCCCGCTCTC GGCAGAGAAT TCCACGTGAT CTGGCCATGT 781 GTGTTACTCC AAGTGGCCAG TTTTACTGCT CAATGTGTAA TGTTGGAGCT GGCGAAGAGA 841 TGGAATTCCG GCAGCATTTA GAGAGCAAGC AACATAAGAG CAAGGTGTCT GAACAGCGGT 901 ACAGGAATGA GATGGAGAAT CTGGGATATG TATACCCAAC TTTCTTGTAC AAAGTtggca 961 ttataagaaa gcattgctta tcaatttgtt gcaacgaac