Construct: ORF ccsbBroadEn_03949

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009129.1_s300c1, BRDN0000390410
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCLRE1C (64421)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289076.2 100% 100%
2 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289078.2 100% 100%
3 human 64421 DCLRE1C DNA cross-link repair 1C NM_022487.4 100% 100%
4 human 64421 DCLRE1C DNA cross-link repair 1C XM_006717491.4 100% 100%
5 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519616.1 100% 100%
6 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519617.1 100% 100%
7 human 64421 DCLRE1C DNA cross-link repair 1C XM_017016557.1 100% 100%
8 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033857.3 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
9 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033858.3 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
10 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289077.2 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
11 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289079.2 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
12 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519619.1 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
13 human 64421 DCLRE1C DNA cross-link repair 1C XM_017016558.1 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
14 human 64421 DCLRE1C DNA cross-link repair 1C XM_024448134.1 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
15 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350966.2 84.3% 81.3% (many diffs)
16 human 64421 DCLRE1C DNA cross-link repair 1C XM_024448135.1 84.3% 81.3% (many diffs)
17 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350967.2 83.4% 80.3% (many diffs)
18 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033855.3 83.3% 82.5% 1_289del;307_362del
19 human 64421 DCLRE1C DNA cross-link repair 1C XR_001747187.1 75.2% 1_325del;1136_1276del;2198_2301del
20 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350965.2 70.4% 67.2% (many diffs)
21 human 64421 DCLRE1C DNA cross-link repair 1C XR_001747185.2 66.4% (many diffs)
22 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519620.3 39.3% 38.2% (many diffs)
23 human 64421 DCLRE1C DNA cross-link repair 1C NR_146960.1 39.3% (many diffs)
24 human 64421 DCLRE1C DNA cross-link repair 1C XR_930515.2 30.1% (many diffs)
25 human 64421 DCLRE1C DNA cross-link repair 1C NR_146961.2 28.5% 1_460del;1177_1241del;2257_6054del
26 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519621.2 28.1% 26.8% (many diffs)
27 human 64421 DCLRE1C DNA cross-link repair 1C NR_110297.2 27.4% (many diffs)
28 human 64421 DCLRE1C DNA cross-link repair 1C NR_146962.1 27.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1797
ORF length:
1731
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GCATCAGGAG AGGTTTTTAT TTCAGGGCAA TAATGGAACT GTCCTGTACA
121CAGGAGACTT CAGATTGGCG CAAGGAGAAG CTGCTAGAAT GGAGCTTCTG CACTCCGGGG
181GCAGAGTCAA AGACATCCAA AGTGTATATT TGGATACTAC GTTCTGTGAT CCAAGATTTT
241ACCAAATTCC AAGTCGGGAG GAGTGTTTAA GTGGAGTCTT AGAGCTGGTC CGAAGCTGGA
301TCACTCGGAG CCCGTACCAT GTTGTGTGGC TGAACTGCAA AGCGGCTTAT GGCTATGAAT
361ATCTGTTCAC CAACCTTAGT GAAGAATTAG GAGTCCAGGT TCATGTGAAT AAGCTAGACA
421TGTTTAGGAA CATGCCTGAG ATCCTTCATC ATCTCACAAC AGACCGCAAC ACTCAGATCC
481ATGCATGCCG GCATCCCAAG GCAGAGGAAT ATTTTCAGTG GAGCAAATTA CCCTGTGGAA
541TTACTTCCAG AAATAGAATT CCACTCCACA TAATCAGCAT TAAGCCATCC ACCATGTGGT
601TTGGAGAAAG GAGCAGAAAA ACAAATGTAA TTGTGAGGAC TGGAGAGAGT TCATACAGAG
661CTTGTTTTTC TTTTCACTCC TCCTACAGTG AGATTAAAGA TTTCTTGAGC TACCTCTGTC
721CTGTGAACGC ATATCCAAAT GTCATTCCAG TTGGCACAAC TATGGATAAA GTTGTCGAAA
781TCTTAAAGCC TTTATGCCGG TCTTCCCAAA GTACGGAGCC AAAGTATAAA CCACTGGGAA
841AACTGAAGAG AGCTAGAACA GTTCACCGAG ACTCAGAGGA GGAAGATGAC TATCTCTTTG
901ATGATCCTCT GCCAATACCT TTAAGGCACA AAGTTCCATA CCCGGAAACT TTTCACCCTG
961AGGTATTTTC AATGACTGCA GTATCAGAAA AGCAGCCTGA AAAACTGAGA CAAACCCCAG
1021GATGCTGCAG AGCAGAGTGT ATGCAGAGCT CTCGTTTCAC AAACTTTGTA GATTGTGAAG
1081AATCCAACAG TGAAAGTGAA GAAGAAGTAG GAATCCCAGC TTCACTGCAA GGAGATCTGG
1141GCTCTGTACT TCACCTGCAA AAGGCTGATG GGGATGTACC CCAGTGGGAA GTATTCTTTA
1201AAAGAAATGA TGAAATCACA GATGAGAGTT TGGAAAACTT CCCTTCCTCC ACAGTGGCAG
1261GGGGATCTCA GTCACCAAAG CTTTTCAGTG ACTCTGATGG AGAATCAACT CACATCTCCT
1321CCCAGAATTC TTCCCAGTCA ACACACATAA CAGAACAAGG AAGTCAAGGC TGGGACAGCC
1381AATCTGATAC TGTTTTGTTA TCTTCCCAAG AGAGAAACAG TGGGGATATT ACTTCCTTGG
1441ACAAAGCTGA CTACAGACCA ACAATCAAAG AGAATATTCC TGCCTCTCTC ATGGAACAAA
1501ATGTAATTTG CCCAAAGGAT ACTTACTCTG ATTTGAAAAG CAGAGATAAA GATGTGACAA
1561TAGTTCCTAG TACTGGAGAA CCAACTACTC TAAGCAGTGA GACACATATA CCCGAGGAAA
1621AAAGTTTGCT AAATCTTAGC ACAAATGCAG ATTCCCAGAG CTCTTCTGAT TTTGAAGTTC
1681CCTCAACTCC AGAAGCTGAG TTACCTAAAC GAGAGCATTT ACAATATTTA TATGAGAAGC
1741TGGCAACTGG TGAGAGTATA GCAGTCAAAA AAAGAAAATG CTCACTCTTA GATACCTACC
1801CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1861aac

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