Construct: ORF ccsbBroadEn_03949

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009129.1_s300c1, BRDN0000390410
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCLRE1C (64421)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289076.2 100% 100%
2 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289078.2 100% 100%
3 human 64421 DCLRE1C DNA cross-link repair 1C NM_022487.4 100% 100%
4 human 64421 DCLRE1C DNA cross-link repair 1C XM_006717491.4 100% 100%
5 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519616.1 100% 100%
6 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519617.1 100% 100%
7 human 64421 DCLRE1C DNA cross-link repair 1C XM_017016557.1 100% 100%
8 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033857.3 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
9 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033858.3 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
10 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289077.2 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
11 human 64421 DCLRE1C DNA cross-link repair 1C NM_001289079.2 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
12 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519619.1 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
13 human 64421 DCLRE1C DNA cross-link repair 1C XM_017016558.1 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
14 human 64421 DCLRE1C DNA cross-link repair 1C XM_024448134.1 99% 98.9% 0_1insATGAAGCATCAGGAG;2T>G
15 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350966.2 84.3% 81.3% (many diffs)
16 human 64421 DCLRE1C DNA cross-link repair 1C XM_024448135.1 84.3% 81.3% (many diffs)
17 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350967.2 83.4% 80.3% (many diffs)
18 human 64421 DCLRE1C DNA cross-link repair 1C NM_001033855.3 83.3% 82.5% 1_289del;307_362del
19 human 64421 DCLRE1C DNA cross-link repair 1C XR_001747187.1 75.2% 1_325del;1136_1276del;2198_2301del
20 human 64421 DCLRE1C DNA cross-link repair 1C NM_001350965.2 70.4% 67.2% (many diffs)
21 human 64421 DCLRE1C DNA cross-link repair 1C XR_001747185.2 66.4% (many diffs)
22 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519620.3 39.3% 38.2% (many diffs)
23 human 64421 DCLRE1C DNA cross-link repair 1C NR_146960.1 39.3% (many diffs)
24 human 64421 DCLRE1C DNA cross-link repair 1C XR_930515.2 30.1% (many diffs)
25 human 64421 DCLRE1C DNA cross-link repair 1C NR_146961.2 28.5% 1_460del;1177_1241del;2257_6054del
26 human 64421 DCLRE1C DNA cross-link repair 1C XM_011519621.2 28.1% 26.8% (many diffs)
27 human 64421 DCLRE1C DNA cross-link repair 1C NR_110297.2 27.4% (many diffs)
28 human 64421 DCLRE1C DNA cross-link repair 1C NR_146962.1 27.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1797
ORF length:
1731
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GCATCAGGAG AGGTTTTTAT TTCAGGGCAA TAATGGAACT GTCCTGTACA
121CAGGAGACTT CAGATTGGCG CAAGGAGAAG CTGCTAGAAT GGAGCTTCTG CACTCCGGGG
181GCAGAGTCAA AGACATCCAA AGTGTATATT TGGATACTAC GTTCTGTGAT CCAAGATTTT
241ACCAAATTCC AAGTCGGGAG GAGTGTTTAA GTGGAGTCTT AGAGCTGGTC CGAAGCTGGA
301TCACTCGGAG CCCGTACCAT GTTGTGTGGC TGAACTGCAA AGCGGCTTAT GGCTATGAAT
361ATCTGTTCAC CAACCTTAGT GAAGAATTAG GAGTCCAGGT TCATGTGAAT AAGCTAGACA
421TGTTTAGGAA CATGCCTGAG ATCCTTCATC ATCTCACAAC AGACCGCAAC ACTCAGATCC
481ATGCATGCCG GCATCCCAAG GCAGAGGAAT ATTTTCAGTG GAGCAAATTA CCCTGTGGAA
541TTACTTCCAG AAATAGAATT CCACTCCACA TAATCAGCAT TAAGCCATCC ACCATGTGGT
601TTGGAGAAAG GAGCAGAAAA ACAAATGTAA TTGTGAGGAC TGGAGAGAGT TCATACAGAG
661CTTGTTTTTC TTTTCACTCC TCCTACAGTG AGATTAAAGA TTTCTTGAGC TACCTCTGTC
721CTGTGAACGC ATATCCAAAT GTCATTCCAG TTGGCACAAC TATGGATAAA GTTGTCGAAA
781TCTTAAAGCC TTTATGCCGG TCTTCCCAAA GTACGGAGCC AAAGTATAAA CCACTGGGAA
841AACTGAAGAG AGCTAGAACA GTTCACCGAG ACTCAGAGGA GGAAGATGAC TATCTCTTTG
901ATGATCCTCT GCCAATACCT TTAAGGCACA AAGTTCCATA CCCGGAAACT TTTCACCCTG
961AGGTATTTTC AATGACTGCA GTATCAGAAA AGCAGCCTGA AAAACTGAGA CAAACCCCAG
1021GATGCTGCAG AGCAGAGTGT ATGCAGAGCT CTCGTTTCAC AAACTTTGTA GATTGTGAAG
1081AATCCAACAG TGAAAGTGAA GAAGAAGTAG GAATCCCAGC TTCACTGCAA GGAGATCTGG
1141GCTCTGTACT TCACCTGCAA AAGGCTGATG GGGATGTACC CCAGTGGGAA GTATTCTTTA
1201AAAGAAATGA TGAAATCACA GATGAGAGTT TGGAAAACTT CCCTTCCTCC ACAGTGGCAG
1261GGGGATCTCA GTCACCAAAG CTTTTCAGTG ACTCTGATGG AGAATCAACT CACATCTCCT
1321CCCAGAATTC TTCCCAGTCA ACACACATAA CAGAACAAGG AAGTCAAGGC TGGGACAGCC
1381AATCTGATAC TGTTTTGTTA TCTTCCCAAG AGAGAAACAG TGGGGATATT ACTTCCTTGG
1441ACAAAGCTGA CTACAGACCA ACAATCAAAG AGAATATTCC TGCCTCTCTC ATGGAACAAA
1501ATGTAATTTG CCCAAAGGAT ACTTACTCTG ATTTGAAAAG CAGAGATAAA GATGTGACAA
1561TAGTTCCTAG TACTGGAGAA CCAACTACTC TAAGCAGTGA GACACATATA CCCGAGGAAA
1621AAAGTTTGCT AAATCTTAGC ACAAATGCAG ATTCCCAGAG CTCTTCTGAT TTTGAAGTTC
1681CCTCAACTCC AGAAGCTGAG TTACCTAAAC GAGAGCATTT ACAATATTTA TATGAGAAGC
1741TGGCAACTGG TGAGAGTATA GCAGTCAAAA AAAGAAAATG CTCACTCTTA GATACCTACC
1801CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1861aac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.