Construct: ORF ccsbBroadEn_03949
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009129.1_s300c1, BRDN0000390410
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DCLRE1C (64421)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289076.2 | 100% | 100% | |
| 2 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289078.2 | 100% | 100% | |
| 3 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_022487.4 | 100% | 100% | |
| 4 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_006717491.4 | 100% | 100% | |
| 5 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519616.1 | 100% | 100% | |
| 6 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519617.1 | 100% | 100% | |
| 7 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_017016557.1 | 100% | 100% | |
| 8 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001033857.3 | 99% | 98.9% | 0_1insATGAAGCATCAGGAG;2T>G |
| 9 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001033858.3 | 99% | 98.9% | 0_1insATGAAGCATCAGGAG;2T>G |
| 10 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289077.2 | 99% | 98.9% | 0_1insATGAAGCATCAGGAG;2T>G |
| 11 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001289079.2 | 99% | 98.9% | 0_1insATGAAGCATCAGGAG;2T>G |
| 12 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519619.1 | 99% | 98.9% | 0_1insATGAAGCATCAGGAG;2T>G |
| 13 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_017016558.1 | 99% | 98.9% | 0_1insATGAAGCATCAGGAG;2T>G |
| 14 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_024448134.1 | 99% | 98.9% | 0_1insATGAAGCATCAGGAG;2T>G |
| 15 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001350966.2 | 84.3% | 81.3% | (many diffs) |
| 16 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_024448135.1 | 84.3% | 81.3% | (many diffs) |
| 17 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001350967.2 | 83.4% | 80.3% | (many diffs) |
| 18 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001033855.3 | 83.3% | 82.5% | 1_289del;307_362del |
| 19 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XR_001747187.1 | 75.2% | 1_325del;1136_1276del;2198_2301del | |
| 20 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NM_001350965.2 | 70.4% | 67.2% | (many diffs) |
| 21 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XR_001747185.2 | 66.4% | (many diffs) | |
| 22 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519620.3 | 39.3% | 38.2% | (many diffs) |
| 23 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_146960.1 | 39.3% | (many diffs) | |
| 24 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XR_930515.2 | 30.1% | (many diffs) | |
| 25 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_146961.2 | 28.5% | 1_460del;1177_1241del;2257_6054del | |
| 26 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | XM_011519621.2 | 28.1% | 26.8% | (many diffs) |
| 27 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_110297.2 | 27.4% | (many diffs) | |
| 28 | human | 64421 | DCLRE1C | DNA cross-link repair 1C | NR_146962.1 | 27.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1797
- ORF length:
- 1731
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GCATCAGGAG AGGTTTTTAT TTCAGGGCAA TAATGGAACT GTCCTGTACA 121 CAGGAGACTT CAGATTGGCG CAAGGAGAAG CTGCTAGAAT GGAGCTTCTG CACTCCGGGG 181 GCAGAGTCAA AGACATCCAA AGTGTATATT TGGATACTAC GTTCTGTGAT CCAAGATTTT 241 ACCAAATTCC AAGTCGGGAG GAGTGTTTAA GTGGAGTCTT AGAGCTGGTC CGAAGCTGGA 301 TCACTCGGAG CCCGTACCAT GTTGTGTGGC TGAACTGCAA AGCGGCTTAT GGCTATGAAT 361 ATCTGTTCAC CAACCTTAGT GAAGAATTAG GAGTCCAGGT TCATGTGAAT AAGCTAGACA 421 TGTTTAGGAA CATGCCTGAG ATCCTTCATC ATCTCACAAC AGACCGCAAC ACTCAGATCC 481 ATGCATGCCG GCATCCCAAG GCAGAGGAAT ATTTTCAGTG GAGCAAATTA CCCTGTGGAA 541 TTACTTCCAG AAATAGAATT CCACTCCACA TAATCAGCAT TAAGCCATCC ACCATGTGGT 601 TTGGAGAAAG GAGCAGAAAA ACAAATGTAA TTGTGAGGAC TGGAGAGAGT TCATACAGAG 661 CTTGTTTTTC TTTTCACTCC TCCTACAGTG AGATTAAAGA TTTCTTGAGC TACCTCTGTC 721 CTGTGAACGC ATATCCAAAT GTCATTCCAG TTGGCACAAC TATGGATAAA GTTGTCGAAA 781 TCTTAAAGCC TTTATGCCGG TCTTCCCAAA GTACGGAGCC AAAGTATAAA CCACTGGGAA 841 AACTGAAGAG AGCTAGAACA GTTCACCGAG ACTCAGAGGA GGAAGATGAC TATCTCTTTG 901 ATGATCCTCT GCCAATACCT TTAAGGCACA AAGTTCCATA CCCGGAAACT TTTCACCCTG 961 AGGTATTTTC AATGACTGCA GTATCAGAAA AGCAGCCTGA AAAACTGAGA CAAACCCCAG 1021 GATGCTGCAG AGCAGAGTGT ATGCAGAGCT CTCGTTTCAC AAACTTTGTA GATTGTGAAG 1081 AATCCAACAG TGAAAGTGAA GAAGAAGTAG GAATCCCAGC TTCACTGCAA GGAGATCTGG 1141 GCTCTGTACT TCACCTGCAA AAGGCTGATG GGGATGTACC CCAGTGGGAA GTATTCTTTA 1201 AAAGAAATGA TGAAATCACA GATGAGAGTT TGGAAAACTT CCCTTCCTCC ACAGTGGCAG 1261 GGGGATCTCA GTCACCAAAG CTTTTCAGTG ACTCTGATGG AGAATCAACT CACATCTCCT 1321 CCCAGAATTC TTCCCAGTCA ACACACATAA CAGAACAAGG AAGTCAAGGC TGGGACAGCC 1381 AATCTGATAC TGTTTTGTTA TCTTCCCAAG AGAGAAACAG TGGGGATATT ACTTCCTTGG 1441 ACAAAGCTGA CTACAGACCA ACAATCAAAG AGAATATTCC TGCCTCTCTC ATGGAACAAA 1501 ATGTAATTTG CCCAAAGGAT ACTTACTCTG ATTTGAAAAG CAGAGATAAA GATGTGACAA 1561 TAGTTCCTAG TACTGGAGAA CCAACTACTC TAAGCAGTGA GACACATATA CCCGAGGAAA 1621 AAAGTTTGCT AAATCTTAGC ACAAATGCAG ATTCCCAGAG CTCTTCTGAT TTTGAAGTTC 1681 CCTCAACTCC AGAAGCTGAG TTACCTAAAC GAGAGCATTT ACAATATTTA TATGAGAAGC 1741 TGGCAACTGG TGAGAGTATA GCAGTCAAAA AAAGAAAATG CTCACTCTTA GATACCTACC 1801 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1861 aac