Transcript: Human NM_001033858.3

Homo sapiens DNA cross-link repair 1C (DCLRE1C), transcript variant c, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
DCLRE1C (64421)
Length:
6367
CDS:
854..2572

Additional Resources:

NCBI RefSeq record:
NM_001033858.3
NBCI Gene record:
DCLRE1C (64421)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001033858.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000083381 CCAGTGGGAAGTATTCTTTAA pLKO.1 1954 CDS 100% 13.200 18.480 N DCLRE1C n/a
2 TRCN0000276611 GATCCTCTGCCAATACCTTTA pLKO_005 1676 CDS 100% 10.800 15.120 N DCLRE1C n/a
3 TRCN0000276612 TATGGATAAAGTTGTCGAAAT pLKO_005 1534 CDS 100% 10.800 15.120 N DCLRE1C n/a
4 TRCN0000083382 CGTTTCACAAACTTTGTAGAT pLKO.1 1826 CDS 100% 4.950 6.930 N DCLRE1C n/a
5 TRCN0000276608 ATTTGCCCAAAGGATACTTAC pLKO_005 2279 CDS 100% 10.800 8.640 N DCLRE1C n/a
6 TRCN0000083378 GCACAGAGATGACAGTCAATA pLKO.1 2615 3UTR 100% 13.200 9.240 N DCLRE1C n/a
7 TRCN0000083379 GCAGAGATAAAGATGTGACAA pLKO.1 2313 CDS 100% 4.950 3.465 N DCLRE1C n/a
8 TRCN0000083380 CTGTGGAATTACTTCCAGAAA pLKO.1 1306 CDS 100% 0.495 0.347 N DCLRE1C n/a
9 TRCN0000276609 ACGAGAGCATTTACAATATTT pLKO_005 2482 CDS 100% 15.000 9.000 N DCLRE1C n/a
10 TRCN0000276617 AGCGGCTTATGGCTATGAATA pLKO_005 1114 CDS 100% 13.200 6.600 Y DCLRE1C n/a
11 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 5235 3UTR 100% 5.625 2.813 Y KLHL30 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 5235 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001033858.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03949 pDONR223 100% 99% 98.9% None 0_1insATGAAGCATCAGGAG;2T>G n/a
2 TRCN0000471456 TAGCCCTTTTAGGCTGACAGCTCG pLX_317 23.2% 99% 98.9% V5 0_1insATGAAGCATCAGGAG;2T>G n/a
3 ccsbBroadEn_12471 pDONR223 100% 42.1% 39.5% None (many diffs) n/a
4 ccsbBroad304_12471 pLX_304 0% 42.1% 39.5% V5 (many diffs) n/a
5 TRCN0000465585 AGAATCAACACGATTGCACTCCGA pLX_317 32.6% 42.1% 39.5% V5 (many diffs) n/a
Download CSV