Construct: ORF ccsbBroadEn_03984
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006186.1_s300c1, BRDN0000396930
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC30A5 (64924)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64924 | SLC30A5 | solute carrier family 30 me... | NM_024055.5 | 100% | 100% | |
| 2 | human | 64924 | SLC30A5 | solute carrier family 30 me... | NM_001251969.2 | 65.2% | 65.2% | 82_83ins123 |
| 3 | human | 64924 | SLC30A5 | solute carrier family 30 me... | XM_006714672.4 | 13.9% | 13% | (many diffs) |
| 4 | human | 64924 | SLC30A5 | solute carrier family 30 me... | NM_022902.5 | 13.2% | 12.3% | (many diffs) |
| 5 | mouse | 69048 | Slc30a5 | solute carrier family 30 (z... | NM_022885.2 | 12.3% | 11.1% | (many diffs) |
| 6 | mouse | 69048 | Slc30a5 | solute carrier family 30 (z... | XR_382742.3 | 8.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 420
- ORF length:
- 354
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGAGAAATAC GGCGGGGACG TGCTGGCCGG CCCCGGCGGC GGCGGCGGCC 121 TTGGGCCGGT GGACGTACCC AGCGCTCGAT TAACAAAATA TATTGTGTTA CTATGTTTCA 181 CTAAATTTTT GAAGGCTGTG GGACTTTTCG AATCATATGA TCTCCTAAAA GCTGTTCACA 241 TTGTTCAGTT CATTTTTATA TTAAAACTTG GGACTGCATT TTTTATGGTT TTGTTTCAAA 301 AGCCATTTTC TTCTGGGAAA ACTATTACCA AACACCAGAT AATTGGATCA CTAAAAATTC 361 CTGGTAGAAA AGAATTTAAA GACAAAAAGT TAAATGATCC TAGGAAACTA GTGGGAAACT 421 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 481 acgaac