Construct: ORF ccsbBroadEn_04048
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001133.1_s300c1, BRDN0000389758
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C9orf16 (79095)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79095 | C9orf16 | chromosome 9 open reading f... | NM_024112.4 | 100% | 100% | |
| 2 | human | 79095 | C9orf16 | chromosome 9 open reading f... | XM_011519004.1 | 62.5% | 60.9% | (many diffs) |
| 3 | mouse | 73737 | 1110008P14Rik | RIKEN cDNA 1110008P14 gene | NM_198001.2 | 90.3% | 93.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 315
- ORF length:
- 249
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GGGCCCCAAC GGAGACCTGG GGATGCCGGT GGAGGCGGGA GCGGAAGGCG 121 AGGAGGACGG CTTCGGGGAA GCAGAATACG CTGCCATCAA CTCCATGCTG GACCAGATCA 181 ACTCCTGTCT GGACCACCTG GAGGAGAAGA ATGACCACCT CCACGCCCGC CTCCAGGAGC 241 TGCTGGAGTC CAACCGGCAG ACACGCCTGG AGTTCCAGCA GCAGCTCGGG GAGGCCCCCA 301 GTGATGCCAG CCCCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 361 tatcaatttg ttgcaacgaa c