Construct: ORF ccsbBroadEn_04127

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008103.1_s300c1, BRDN0000385624
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C12orf49 (79794)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79794 C12orf49 chromosome 12 open reading ... NM_024738.4 100% 100%
2 human 79794 C12orf49 chromosome 12 open reading ... XM_024449189.1 80.7% 71.9% 1_67del;112_113ins64
3 human 79794 C12orf49 chromosome 12 open reading ... NM_001353623.2 67.1% 51.4% 1_67del;177_178ins157
4 human 79794 C12orf49 chromosome 12 open reading ... NM_001353624.2 49.7% 49.7% 109_110ins309
5 human 79794 C12orf49 chromosome 12 open reading ... NM_001353625.2 31.2% 31.2% 108_109ins423
6 mouse 76792 2410131K14Rik RIKEN cDNA 2410131K14 gene NM_001081236.1 85.7% 92.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
681
ORF length:
615
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GAACCTGGCG GCCATGGTGT GGCGCCGGCT TCTGCGGAAG AGGTGGGTGC
121TCGCCCTGGT CTTCGGGCTG TCGCTCGTCT ACTTCCTCAG CAGCACCTTC AAGCAGGAGG
181AGAGGGCAGT GAGAGATAGG AATCTCCTCC AGGTTCATGA CCATAATCAG CCCATCCCGT
241GGAAAGTGCA GTTTAACTTG GGCAATAGCA GTCGTCCGAG CAATCAGTGC CGCAACTCCA
301TTCAAGGGAA GCACCTCATC ACGGATGAAC TCGGCTACGT TTGCGAGAGG AAGGATTTGC
361TGGTAAATGG CTGCTGTAAT GTCAACGTCC CTAGCACGAA GCAGTACTGC TGTGATGGCT
421GCTGGCCCAA CGGCTGCTGC AGCGCCTATG AGTACTGTGT CTCCTGCTGC CTGCAGCCCA
481ACAAGCAACT TCTCCTGGAG CGCTTCCTCA ACCGGGCAGC CGTGGCATTC CAGAACCTCT
541TCATGGCAGT CGAAGATCAC TTTGAGTTGT GCCTGGCCAA ATGCAGGACC TCATCTCAGA
601GCGTGCAGCA TGAGAACACC TACCGGGACC CCATAGCAAA GTATTGCTAT GGAGAAAGCC
661CGCCCGAGCT CTTCCCCGCT TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
721attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)