Construct: ORF ccsbBroadEn_04152
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017533.1_s300c1, BRDN0000392976
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CEP76 (79959)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79959 | CEP76 | centrosomal protein 76 | NM_024899.4 | 100% | 100% | |
| 2 | human | 79959 | CEP76 | centrosomal protein 76 | XM_005258149.5 | 99.4% | 99.2% | (many diffs) |
| 3 | human | 79959 | CEP76 | centrosomal protein 76 | XM_017025982.1 | 96.8% | 96.8% | 0_1ins63 |
| 4 | human | 79959 | CEP76 | centrosomal protein 76 | XM_017025983.2 | 93.4% | 93.4% | 799_800ins129 |
| 5 | human | 79959 | CEP76 | centrosomal protein 76 | XM_017025981.2 | 92.7% | 92.6% | (many diffs) |
| 6 | human | 79959 | CEP76 | centrosomal protein 76 | NM_001271989.1 | 88.6% | 88.4% | 295_296ins225 |
| 7 | human | 79959 | CEP76 | centrosomal protein 76 | NR_073537.1 | 81.6% | (many diffs) | |
| 8 | human | 79959 | CEP76 | centrosomal protein 76 | XM_017025984.1 | 72.9% | 72.9% | 0_1ins534 |
| 9 | human | 79959 | CEP76 | centrosomal protein 76 | XM_017025985.1 | 72.9% | 72.9% | 0_1ins534 |
| 10 | human | 79959 | CEP76 | centrosomal protein 76 | XM_017025986.1 | 72.9% | 72.9% | 0_1ins534 |
| 11 | human | 79959 | CEP76 | centrosomal protein 76 | XM_017025987.1 | 72.9% | 72.9% | 0_1ins534 |
| 12 | mouse | 225659 | Cep76 | centrosomal protein 76 | NM_001081073.1 | 90.2% | 97.7% | (many diffs) |
| 13 | mouse | 225659 | Cep76 | centrosomal protein 76 | XM_006525899.2 | 65.9% | 71.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2043
- ORF length:
- 1977
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GCTGCCTCCG GAGAAAGCCT CCGAGCTGAA GCAGCTCATC CACCAGCAGC 121 TGAGCAAGAT GGATGTCCAT GGTAGAATAA GAGAAATCCT TGCTGAGACT ATACGGGAAG 181 AATTGGCACC TGATCAACAG CATTTATCAA CAGAAGATTT GATCAAAGCC CTTAGACGTC 241 GAGGAATCAT TGACGATGTG ATGAAAGAAC TTAATTTTGT TACTGACAGT GTTGAGCAAG 301 AACTCCCTTC CTCTCCAAAA CAACCTATTT GTTTTGATAG ACAATCGACA TTAAAAAAAA 361 CTAATATTGA TCCAACACGG AGGTATCTTT ACCTTCAGGT TTTGGGTGGA AAAGCTTTCT 421 TGGAACATCT GCAAGAACCT GAGCCTTTAC CTGGACAAGT TTGTTCAACG TTTACTTTAT 481 GTTTACATTA TCGAAACCAA CGTTTTCGTT CTAAACCTGT TCCATGTGCC TGTGAACCAG 541 ATTTTCATGA TGGCTTTTTA CTTGAAGTAC ACAGAGAAAG CTTGGGTGAT GGAACTAGAA 601 TGGCTGATTC AACAACAATG TTATCAATAA GTGATCCAAT TCATATGGTG CTAATCAAAA 661 CAGACATATT TGGTGAGACG ACTTTAGTAG CATCATATTT TCTGGAATGG CGATCGGTTT 721 TGGGCTCAGA AAATGGAGTG ACCAGTCTGA CTGTGGAACT TATGGGTGTA GGCACAGAAT 781 CAAAAGTTTC TGTGGGAATT TTAAATATAA AACTTGAAAT GTATCCACCA CTCAATCAAA 841 CGTTATCTCA AGAAGTAGTG AACACACAGC TTGCTTTGGA ACGTCAGAAA ACTGCAGAGA 901 AAGAGCGATT ATTTCTTGTA TATGCTAAGC AGTGGTGGAG AGAATATTTG CAAATTCGAC 961 CCTCACACAA CTCACGACTG GTTAAGATTT TTGCACAGGA TGAAAATGGG ATAAATAGAC 1021 CAGTCTGTTC CTATGTTAAA CCACTTCGAG CTGGACGGCT TCTTGATACT CCAAGGCAAG 1081 CAGCAAGATT TGTTAATGTC CTTGGTTATG AACGAGCCCC TGTTATTGGA GGAGGAGGTA 1141 AACAGGAGCA GTGGTGCACT CTGCTGGCCT TTCTCTGTAG AAACAAGGGT GACTGTGAAG 1201 ATCACGCTAA CCTTCTGTGC AGCCTTCTTC TTGGATATGG ATTAGAAGCC TTTGTTTGTG 1261 TTGGGACCAA GGCAAAAGGA GTACCTCATG CATGGGTTAT GACTTGTGGA ACTGATGGGG 1321 CCATCACTTT TTGGGAGAGT TTAACAGGAC ACAGGTACAT CCATAAACCT ACCAATCCTG 1381 ATGAACCTCC AGTTGCTGAA CAGCCCAAAC CACTGTACCC ATATCGAACA ATTGGTTGTG 1441 TTTTCAACCA TCAGATGTTC CTGGGAAATT GTCAACCCTC TGATGCAGTA GAAACCTGTG 1501 TATTTGATTT GAACGATGAA TCCAAATGGA AACCCATGAG TGAGGAAGCA ATTAAATCTG 1561 TGTGTGCTCC TGGAGCTACA ACATCCCTTC CTCCCTTTCC ACCTCTGTGT GCATCCACAA 1621 TTGACGCGTC AGTAACAAGT AATGAAATTG AAATGCAGCT GAGGCTCCTG GTGTCAGAAC 1681 ACAGGAAGGA TCTTGGCCTC ACTACTGTTT GGGAAGACCA GCTCTCCTAC CTTTTATCAC 1741 CAGCTTTGGC TTCTTATGAA TTTGAGCGTA CAACAAGTAT ATCAGCAGGC AATGAAGAAT 1801 TTCAAGATGC CATAAGAAGG GCTGTACCTG ATGGTCACAC ATTTAAAGGG TTCCCAATAC 1861 ATTTTGTGTA TAGAAATGCA AGACGTGCAT TTGCCACATG TCTTCGATCT CCTTTCTGTG 1921 AAGAAATAAT CTGTTGCCGT GGAGACCAAG TGCGACTGGC AGTTCGTGTC CGAGTATTTA 1981 CTTACCCTGA ATCTGCATGT GCTGTTTGGA TCATGTTTGC TTGTAAATAT CGCTCGGTAT 2041 TATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 2101 gcaacgaac