Construct: ORF ccsbBroadEn_04153
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014236.1_s300c1, BRDN0000386433
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- JADE1 (79960)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_001287441.2 | 100% | 100% | |
| 2 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_024900.5 | 100% | 100% | |
| 3 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_017008626.2 | 95.4% | 94.3% | (many diffs) |
| 4 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_017008627.1 | 95.4% | 94.3% | (many diffs) |
| 5 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_024454221.1 | 95.4% | 94.3% | (many diffs) |
| 6 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_001287439.2 | 60.2% | 59.7% | (many diffs) |
| 7 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_001287440.2 | 60.2% | 59.7% | (many diffs) |
| 8 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_001287442.1 | 60.2% | 59.7% | (many diffs) |
| 9 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_001287443.1 | 60.2% | 59.7% | (many diffs) |
| 10 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_199320.4 | 60.2% | 59.7% | (many diffs) |
| 11 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_005263232.2 | 60.2% | 59.7% | (many diffs) |
| 12 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_024454217.1 | 60.2% | 59.7% | (many diffs) |
| 13 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_024454220.1 | 60.2% | 59.7% | (many diffs) |
| 14 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_024454219.1 | 59.3% | 58.8% | (many diffs) |
| 15 | human | 79960 | JADE1 | jade family PHD finger 1 | XM_024454218.1 | 59.1% | 58.6% | (many diffs) |
| 16 | human | 79960 | JADE1 | jade family PHD finger 1 | NM_001287437.2 | 58.8% | 58.3% | (many diffs) |
| 17 | mouse | 269424 | Jade1 | jade family PHD finger 1 | NM_001130184.1 | 55.3% | 58.3% | (many diffs) |
| 18 | mouse | 269424 | Jade1 | jade family PHD finger 1 | NM_001130185.1 | 55.3% | 58.3% | (many diffs) |
| 19 | mouse | 269424 | Jade1 | jade family PHD finger 1 | NM_001130186.1 | 55.3% | 58.3% | (many diffs) |
| 20 | mouse | 269424 | Jade1 | jade family PHD finger 1 | NM_172303.4 | 55.3% | 58.3% | (many diffs) |
| 21 | mouse | 269424 | Jade1 | jade family PHD finger 1 | XM_006500784.3 | 54.3% | 57.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1593
- ORF length:
- 1527
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA ACGAGGTCGC CTTCCCAGCA GCAGTGAGGA TTCTGACGAC AATGGCAGCC 121 TGTCAACTAC TTGGTCCCAG AATTCCCGAT CCCAGCATAG GAGAAGCTCC TGCTCCAGAC 181 ATGAAGATCG AAAGCCTTCA GAGGTGTTTA GGACAGACCT GATCACTGCC ATGAAGTTGC 241 ATGACTCCTA CCAGCTGAAT CCGGATGAGT ACTATGTGTT GGCAGATCCC TGGAGACAGG 301 AATGGGAGAA AGGGGTCCAG GTGCCTGTGA GCCCGGGGAC CATCCCTCAG CCTGTGGCCA 361 GGGTTGTGTC TGAAGAGAAA TCCCTCATGT TCATCAGGCC CAAGAAGTAC ATCGTGTCAT 421 CAGGCTCTGA GCCTCCCGAG TTGGGCTATG TGGACATCCG GACGCTGGCT GACAGCGTGT 481 GTCGCTATGA CCTCAATGAC ATGGATGCTG CATGGCTGGA ACTGACCAAT GAAGAATTTA 541 AGGAGATGGG AATGCCTGAA CTAGATGAAT ACACCATGGA GAGGGTCCTA GAGGAATTTG 601 AGCAGCGATG CTACGACAAT ATGAATCATG CCATAGAGAC TGAGGAAGGC CTGGGGATCG 661 AATATGATGA AGATGTTGTC TGTGATGTCT GCCAGTCTCC TGATGGTGAG GACGGCAATG 721 AGATGGTGTT CTGTGACAAA TGCAACATCT GTGTGCACCA GGCCTGTTAT GGAATCCTCA 781 AGGTACCAGA GGGCAGCTGG CTGTGCCGGA CATGTGCCCT GGGGGTTCAG CCAAAATGTC 841 TGCTGTGTCC GAAGAAGGGT GGAGCTATGA AGCCCACCCG TAGCGGAACC AAGTGGGTCC 901 ACGTTAGCTG TGCTCTGTGG ATCCCTGAGG TGAGCATTGG CAGCCCAGAG AAGATGGAGC 961 CCATCACCAA GGTGTCACAC ATTCCCAGCA GCCGGTGGGC GCTAGTGTGC AGCCTCTGCA 1021 ATGAGAAGTT TGGGGCCTCT ATACAGTGCT CTGTGAAGAA CTGCCGCACA GCCTTCCATG 1081 TGACCTGTGC TTTTGACCGG GGCCTGGAGA TGAAGACCAT CTTAGCAGAG AATGATGAAG 1141 TCAAGTTCAA GTCCTATTGC CCAAAGCACA GCTCACATAG GAAACCCGAG GAGAGTCTTG 1201 GCAAGGGGGC TGCACAGGAG AATGGGGCCC CTGAGTGTTC CCCCCGGAAT CCGCTGGAGC 1261 CCTTTGCCAG CCTTGAGCAG AACCGGGAGG AGGCCCACCG GGTGAGTGTC CGTAAGCAGA 1321 AGCTGCAGCA GTTGGAGGAT GAGTTCTACA CCTTCGTCAA CCTGCTGGAT GTTGCCAGGG 1381 CTCTGCGGCT GCCTGAGGAA GTAGTGGATT TCCTGTACCA GTACTGGAAG TTGAAGAGGA 1441 AGGTCAACTT CAACAAGCCC CTGATCACCC CAAAGAAAGA TGAAGAGGAC AATCTAGCCA 1501 AGCGGGAGCA GGATGTCTTA TTTAGGAGGC TGCAGCTGTT CACGCACCTG CGGCAGGACC 1561 TGGAGAGGGT AATGATTGAC ACTGACACCT TATACCCAAC TTTCTTGTAC AAAGTtggca 1621 ttataagaaa gcattgctta tcaatttgtt gcaacgaac