Construct: ORF ccsbBroadEn_04229
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015232.1_s300c1, BRDN0000398260
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC2A10 (81031)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | NM_030777.4 | 100% | 100% | |
| 2 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XM_011529061.2 | 99.3% | 99% | 4_13delAAAGCATACAinsG |
| 3 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XM_011529060.2 | 96% | 95.9% | 1_64delinsA;66_67delCTinsGG |
| 4 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XM_011529063.2 | 87.3% | 79.5% | (many diffs) |
| 5 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XM_017028087.2 | 87.1% | 87% | 1413_1414delTT;1419_1419delCins207 |
| 6 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XM_011529062.2 | 85.5% | 81.6% | (many diffs) |
| 7 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XM_011529065.2 | 83.7% | 83.4% | (many diffs) |
| 8 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XM_011529064.2 | 81% | 72% | (many diffs) |
| 9 | human | 81031 | SLC2A10 | solute carrier family 2 mem... | XR_936641.2 | 37.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1692
- ORF length:
- 1623
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCCACTCC CCACCTGTCC TGCCTTTGTG TGCCTCTGTG TCTTTGCTGG 121 GTGGCCTGAC CTTTGGTTAT GAACTGGCAG TCATATCAGG TGCCCTGCTG CCACTGCAGC 181 TTGACTTTGG GCTAAGCTGC TTGGAGCAGG AGTTCCTGGT GGGCAGCCTG CTCCTGGGGG 241 CTCTCCTCGC CTCCCTGGTT GGTGGCTTCC TCATTGACTG CTATGGCAGG AAGCAAGCCA 301 TCCTCGGGAG CAACTTGGTG CTGCTGGCAG GCAGCCTGAC CCTGGGCCTG GCTGGTTCCC 361 TGGCCTGGCT GGTCCTGGGC CGCGCTGTGG TTGGCTTCGC CATTTCCCTC TCCTCCATGG 421 CTTGCTGTAT CTACGTGTCA GAGCTGGTGG GGCCACGGCA GCGGGGAGTG CTGGTGTCCC 481 TCTATGAGGC AGGCATCACC GTGGGCATCC TGCTCTCCTA TGCCCTCAAC TATGCACTGG 541 CTGGTACCCC CTGGGGATGG AGGCACATGT TCGGCTGGGC CACTGCACCT GCTGTCCTGC 601 AATCCCTCAG CCTCCTCTTC CTCCCTGCTG GTACAGATGA GACTGCAACA CACAAGGACC 661 TCATCCCACT CCAGGGAGGT GAGGCCCCCA AGCTGGGCCC GGGGAGGCCA CGGTACTCCT 721 TTCTGGACCT CTTCAGGGCA CGCGATAACA TGCGAGGCCG GACCACAGTG GGCCTGGGGC 781 TGGTGCTCTT CCAGCAACTA ACAGGGCAGC CCAACGTGCT GTGCTATGCC TCCACCATCT 841 TCAGCTCCGT TGGTTTCCAT GGGGGATCCT CAGCCGTGCT GGCCTCTGTG GGGCTTGGCG 901 CAGTGAAGGT GGCAGCTACC CTGACCGCCA TGGGGCTGGT GGACCGTGCA GGCCGCAGGG 961 CTCTGTTGCT AGCTGGCTGT GCCCTCATGG CCCTGTCCGT CAGTGGCATA GGCCTCGTCA 1021 GCTTTGCCGT GCCCATGGAC TCAGGCCCAA GCTGTCTGGC TGTGCCCAAT GCCACCGGGC 1081 AGACAGGCCT CCCTGGAGAC TCTGGCCTGC TGCAGGACTC CTCTCTACCT CCCATTCCAA 1141 GGACCAATGA GGACCAAAGG GAGCCAATCT TGTCCACTGC TAAGAAAACC AAGCCCCATC 1201 CCAGATCTGG AGACCCCTCA GCCCCTCCTC GGCTGGCCCT GAGCTCTGCC CTCCCTGGGC 1261 CCCCTCTGCC CGCTCGGGGG CATGCACTGC TGCGCTGGAC CGCACTGCTG TGCCTGATGG 1321 TCTTTGTCAG TGCCTTCTCC TTTGGGTTTG GGCCAGTGAC CTGGCTTGTC CTCAGCGAGA 1381 TCTACCCTGT GGAGATACGA GGAAGAGCCT TCGCCTTCTG CAACAGCTTC AACTGGGCGG 1441 CCAACCTCTT CATCAGCCTC TCCTTCCTCG ATCTCATTGG CACCATCGGC TTGTCCTGGA 1501 CCTTCCTGCT CTACGGACTG ACCGCTGTCC TCGGCCTGGG CTTCATCTAT TTATTTGTTC 1561 CTGAAACAAA AGGCCAGTCG TTGGCAGAGA TAGACCAGCA GTTCCAGAAG AGACGGTTCA 1621 CCCTGAGCTT TGGCCACAGG CAGAACTCCA CTGGCATCCC GTACAGCCGC ATCGAGATCT 1681 CTGCGGCCTC CTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1741 caatttgttg caacgaac