Construct: ORF ccsbBroadEn_04239
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000059.1_s300c1, BRDN0000395971
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSRNP2 (81566)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | NM_030809.3 | 100% | 100% | |
| 2 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_006719621.3 | 100% | 100% | |
| 3 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_024449210.1 | 100% | 100% | |
| 4 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_024449211.1 | 100% | 100% | |
| 5 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_024449212.1 | 100% | 100% | |
| 6 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_024449213.1 | 100% | 100% | |
| 7 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_024449214.1 | 100% | 100% | |
| 8 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_024449215.1 | 100% | 100% | |
| 9 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_024449216.1 | 100% | 100% | |
| 10 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | XM_017019991.2 | 55.9% | 55.9% | 0_1ins717 |
| 11 | human | 81566 | CSRNP2 | cysteine and serine rich nu... | NR_045072.2 | 35.2% | 1_454del;2084_4627del | |
| 12 | mouse | 207785 | Csrnp2 | cysteine-serine-rich nuclea... | NM_153407.2 | 85.2% | 90.7% | (many diffs) |
| 13 | mouse | 207785 | Csrnp2 | cysteine-serine-rich nuclea... | XM_006520683.3 | 46.3% | 47.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1695
- ORF length:
- 1629
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TGCATTCACG GGCTCGGGTC TCAAGAGGAA GTTTGATGAT GTGGATGTGG 121 GCTCATCAGT TTCCAACTCA GATGATGAGA TCTCCAGCAG TGATAGTGCT GACAGCTGCG 181 ACAGCCTCAA TCCTCCTACC ACTGCCAGCT TCACACCCAC ATCCATCCTG AAGCGGCAGA 241 AGCAGCTGCG GAGGAAGAAT GTACGCTTTG ACCAGGTGAC TGTATACTAC TTTGCCCGGC 301 GCCAAGGTTT TACCAGTGTG CCCAGCCAGG GTGGTAGCTC TCTGGGCATG GCCCAGCGCC 361 ATAACTCTGT ACGGAGCTAT ACACTCTGTG AGTTTGCCCA GGAACAGGAG GTGAACCATC 421 GAGAGATTCT GCGTGAGCAC CTGAAGGAAG AGAAACTCCA TGCCAAGAAA ATGAAGCTGA 481 CCAAGAATGG GACAGTGGAG TCGGTGGAGG CTGATGGCCT GACGCTGGAT GATGTGTCAG 541 ATGAAGATAT TGATGTGGAA AATGTGGAGG TGGATGATTA CTTCTTCCTG CAGCCTCTGC 601 CCACCAAACG GCGACGGGCC CTGCTGAGGG CTTCTGGGGT CCACCGTATT GATGCTGAAG 661 AGAAGCAAGA ACTTCGAGCC ATCCGCCTGT CACGGGAAGA ATGTGGTTGT GACTGCCGAC 721 TGTATTGTGA CCCAGAAGCG TGTGCCTGCA GCCAGGCTGG GATTAAATGC CAGGTGGATC 781 GCATGTCCTT TCCATGTGGC TGCTCCCGGG ATGGCTGTGG GAACATGGCA GGACGCATTG 841 AATTTAATCC AATCCGGGTC CGGACTCATT ACCTCCACAC CATTATGAAG CTGGAGCTGG 901 AGAGCAAGCG GCAGGTGAGC CGCCCAGCAG CCCCAGATGA GGAGCCCTCC CCGACTGCCA 961 GTTGCAGCCT GACAGGAGCA CAGGGCTCTG AGACCCAGGA CTTCCAGGAG TTCATTGCTG 1021 AGAATGAGAC AGCAGTGATG CACCTGCAGA GTGCAGAGGA ACTGGAGCGG CTCAAGGCAG 1081 AAGAAGATTC CAGCGGCTCT AGTGCCAGCC TGGACTCGAG CATCGAGAGC CTGGGTGTGT 1141 GCATCCTAGA GGAGCCTCTG GCTGTCCCCG AAGAGCTGTG CCCAGGCCTT ACAGCCCCCA 1201 TTCTCATCCA GGCTCAGCTG CCCCCAGGCT CCTCTGTCCT GTGTTTTACC GAGAACTCAG 1261 ACCACCCAAC TGCCTCAACG GTGAACAGCC CATCCTACTT GAACAGTGGG CCCCTGGTCT 1321 ATTATCAAGT GGAGCAGAGG CCAGTCTTGG GAGTGAAAGG AGAGCCTGGT ACGGAAGAAG 1381 GCTCAGCCTC TTTCCCAAAG GAGAAGGATC TGAATGTCTT CTCTCTCCCT GTTACCTCAC 1441 TCGTGGCTTG TAGCTCCACA GACCCAGCTG CCCTCTGTAA ATCAGAGGTG GGGAAAACAC 1501 CCACCCTAGA AGCTCTATTG CCCGAAGATT GTAACCCTGA GGAGCCTGAA AATGAAGACT 1561 TCCACCCTTC CTGGTCCCCC TCAAGCCTCC CCTTCCGCAC GGACAATGAA GAGGGCTGTG 1621 GGATGGTGAA GACCTCCCAG CAGAATGAGG ATCGGCCCCC TGAAGATTCT TCCTTAGAAC 1681 TCCCTCTGGC AGTGTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1741 tatcaatttg ttgcaacgaa c