Transcript: Human XM_024449215.1

PREDICTED: Homo sapiens cysteine and serine rich nuclear protein 2 (CSRNP2), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CSRNP2 (81566)
Length:
4761
CDS:
589..2220

Additional Resources:

NCBI RefSeq record:
XM_024449215.1
NBCI Gene record:
CSRNP2 (81566)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024449215.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413746 AGGTGACTGTATACTACTTTG pLKO_005 797 CDS 100% 10.800 15.120 N CSRNP2 n/a
2 TRCN0000430189 ATGTGGATGTGGGCTCATCAG pLKO_005 632 CDS 100% 4.050 5.670 N CSRNP2 n/a
3 TRCN0000180252 CGACTGTATTGTGACCCAGAA pLKO.1 1240 CDS 100% 4.050 3.240 N CSRNP2 n/a
4 TRCN0000183275 GCAGGACGCATTGAATTTAAT pLKO.1 1351 CDS 100% 15.000 10.500 N CSRNP2 n/a
5 TRCN0000435412 GGTTATTCTGATATCCCATTT pLKO_005 2630 3UTR 100% 10.800 7.560 N CSRNP2 n/a
6 TRCN0000419056 ACGCTGGATGATGTGTCAGAT pLKO_005 1045 CDS 100% 4.950 3.465 N CSRNP2 n/a
7 TRCN0000436743 CAACTGCCTCAACGGTGAACA pLKO_005 1790 CDS 100% 4.950 3.465 N CSRNP2 n/a
8 TRCN0000179565 GAGCTATACACTCTGTGAGTT pLKO.1 897 CDS 100% 4.950 3.465 N CSRNP2 n/a
9 TRCN0000147489 GCGTATAGAATGGAACTCATT pLKO.1 3446 3UTR 100% 4.950 3.465 N CSRNP2 n/a
10 TRCN0000423112 ATCCATCCTGAAGCGGCAGAA pLKO_005 744 CDS 100% 4.050 2.835 N CSRNP2 n/a
11 TRCN0000180886 GACTCATTACCTCCACACCAT pLKO.1 1386 CDS 100% 2.640 1.848 N CSRNP2 n/a
12 TRCN0000436211 TGCAGCCAGGCTGGGATTAAA pLKO_005 1270 CDS 100% 15.000 9.000 N CSRNP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024449215.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04239 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04239 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000466894 CAACACTGTTCCATAAACGAGCAA pLX_317 19.5% 100% 100% V5 n/a
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