Construct: ORF ccsbBroadEn_04306
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004275.1_s300c1, BRDN0000455395
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KRTAP9-8 (83901)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83901 | KRTAP9-8 | keratin associated protein 9-8 | NM_031963.3 | 99.3% | 98.7% | 371A>G;426C>A;452C>A |
| 2 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_030975.2 | 90.7% | 89.9% | (many diffs) |
| 3 | human | 83900 | KRTAP9-3 | keratin associated protein 9-3 | NM_031962.3 | 90.6% | 91.4% | (many diffs) |
| 4 | human | 83899 | KRTAP9-2 | keratin associated protein 9-2 | NM_031961.3 | 89.4% | 88.5% | (many diffs) |
| 5 | human | 100505724 | KRTAP9-7 | keratin associated protein 9-7 | NM_001277332.1 | 89.3% | 88.1% | (many diffs) |
| 6 | human | 85280 | KRTAP9-4 | keratin associated protein 9-4 | NM_033191.3 | 88.2% | 87.1% | (many diffs) |
| 7 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_001318227.1 | 88.1% | 87.3% | (many diffs) |
| 8 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | XM_003846481.1 | 86% | 82.7% | (many diffs) |
| 9 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | NM_001277331.1 | 79.6% | 75.8% | (many diffs) |
| 10 | human | 728318 | KRTAP9-1 | keratin associated protein 9-1 | NM_001190460.1 | 56.4% | 52% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 546
- ORF length:
- 477
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCCACTGT TGTTCCCCTT GCTGTCAGCC TACGTGCTGC AGGACCACCT 121 GCTGGAAGCC CACCACTGTG ACCACCTGCA GCAGCACACC CTGCTGCCAG CCCTCCTGCT 181 GTGTGTCCAG CTGCTGCCAG CCTTGCTGCC GCCCAACTTG CTGTCAAAAC ACCTGCTGCC 241 AGCCCATCTG TGTGACCAGC TGCTGCCAGC CTTCCTGCTG CAGCACACCC TGCTGTCAGC 301 CCACCTGCTG TGGCCAAACC AGCTGTGGGT CCAGCTGTGG TCAGAGCAGC TCCTGTGCAC 361 CTGTGTACTG CAGAAGAACC TGCTACCACC CCACGACTGT CTGCCTGCCT GGTTGCCTAA 421 ACCAGAGCTG TGGCTCCAGC TGCTGCCAGC CCTGCTGCCG CCCAGCCTGC TGTGAGACCA 481 CCTGCTGCAG GACAACTTGC TTCCAGCCCA CCTGTGTGTA CAGCTGCTGC CAGCCTTCTT 541 GCTGCTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt 601 gttgcaacga ac