Construct: ORF ccsbBroadEn_04344
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004800.1_s300c1, BRDN0000398447
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RHBDD1 (84236)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001167608.3 | 100% | 100% | |
| 2 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349069.1 | 100% | 100% | |
| 3 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349071.2 | 100% | 100% | |
| 4 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349072.2 | 100% | 100% | |
| 5 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_032276.5 | 100% | 100% | |
| 6 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005083.1 | 100% | 100% | |
| 7 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005084.2 | 100% | 100% | |
| 8 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005085.2 | 100% | 100% | |
| 9 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005086.2 | 100% | 100% | |
| 10 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005087.2 | 100% | 100% | |
| 11 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005088.1 | 100% | 100% | |
| 12 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005090.2 | 100% | 100% | |
| 13 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005092.2 | 100% | 100% | |
| 14 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005093.1 | 92.9% | 88.9% | (many diffs) |
| 15 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005094.1 | 92.9% | 88.9% | (many diffs) |
| 16 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005095.1 | 92.6% | 90.3% | (many diffs) |
| 17 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738990.2 | 34.5% | (many diffs) | |
| 18 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738988.2 | 34.5% | (many diffs) | |
| 19 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738989.2 | 33.3% | (many diffs) | |
| 20 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738986.2 | 32.9% | (many diffs) | |
| 21 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738984.2 | 31.7% | (many diffs) | |
| 22 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738991.2 | 23% | (many diffs) | |
| 23 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738987.2 | 22.6% | (many diffs) | |
| 24 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738985.2 | 21.5% | (many diffs) | |
| 25 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738983.2 | 21.4% | (many diffs) | |
| 26 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738982.2 | 16.8% | 1_518del;1373_1835del;1927_5611del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1014
- ORF length:
- 945
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAACGGAGA TCAAGAGGGA TAAATACTGG ACTTATTCTA CTCCTTTCTC 121 AAATCTTCCA TGTTGGGATC AACAATATTC CACCTGTCAC CCTAGCAACT TTGGCCCTCA 181 ACATCTGGTT CTTCTTGAAC CCTCAGAAGC CACTGTATAG CTCCTGCCTT AGTGTGGAGA 241 AGTGTTACCA GCAAAAAGAC TGGCAGCGTT TACTGCTCTC TCCCCTTCAC CATGCTGATG 301 ATTGGCATTT GTATTTCAAT ATGGCATCCA TGCTCTGGAA AGGAATAAAT CTAGAAAGAA 361 GACTGGGAAG TAGATGGTTT GCCTATGTTA TCACCGCATT TTCTGTACTT ACTGGAGTGG 421 TATACCTGCT CTTGCAATTT GCTGTTGCCG AATTTATGGA TGAACCTGAC TTCAAAAGGA 481 GCTGTGCTGT AGGTTTCTCA GGAGTTTTGT TTGCTTTGAA AGTTCTTAAC AACCATTATT 541 GCCCTGGAGG CTTTGTCAAC ATTTTGGGCT TTCCTGTACC GAACAGATTT GCTTGTTGGG 601 TCGAACTTGT GGCTATTCAT TTATTCTCAC CAGGGACTTC CTTCGCTGGG CATCTGGCTG 661 GGATTCTTGT TGGACTAATG TACACTCAAG GGCCTCTGAA GAAAATCATG GAAGCATGTG 721 CAGGCGGTTT TTCCTCCAGT GTTGGTTACC CAGGACGGCA ATACTACTTT AATAGTTCAG 781 GCAGCTCTGG ATATCAGGAT TATTATCCGC ATGGCAGGCC AGATCACTAT GAAGAAGCAC 841 CCAGGAACTA TGACACGTAC ACAGCAGGAC TGAGTGAAGA AGAACAGCTC GAGAGAGCAT 901 TACAAGCCAG CCTCTGGGAC CGAGGAAATA CCAGAAATAG CCCACCACCC TACGGGTTTC 961 ATCTCTCACC AGAAGAAATG AGGAGACAGC GGCTTCACAG ATTCGATAGC CAGTTGCCAA 1021 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac