Construct: ORF ccsbBroadEn_04381
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016924.1_s300c1, BRDN0000387260
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MCRIP2 (84331)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NM_138418.4 | 100% | 100% | |
| 2 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NM_001331229.2 | 78.7% | 78.1% | 310_311ins102 |
| 3 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138605.2 | 50.1% | (many diffs) | |
| 4 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138610.1 | 49.1% | (many diffs) | |
| 5 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138609.1 | 49.1% | (many diffs) | |
| 6 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NM_001331230.2 | 46.2% | 46.2% | 50_51ins258 |
| 7 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138607.2 | 45.8% | (many diffs) | |
| 8 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138608.2 | 45.1% | 1_164del;347_479del;778_1064del | |
| 9 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138604.2 | 44.9% | 1_164del;345_481del;782_1068del | |
| 10 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138611.1 | 44.1% | (many diffs) | |
| 11 | human | 84331 | MCRIP2 | MAPK regulated corepressor ... | NR_138606.2 | 37.8% | 1_164del;344_345ins128;517_803del | |
| 12 | mouse | 68241 | Mcrip2 | MAPK regulated corepressor ... | NM_026633.3 | 85.8% | 85% | (many diffs) |
| 13 | mouse | 68241 | Mcrip2 | MAPK regulated corepressor ... | XM_006524838.2 | 78% | 76.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 546
- ORF length:
- 480
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTA CACCATCACC AAGGGGCCCA GCAAGCTGGT CGCGCAGCGC CGCACAGGTC 121 CCACGCAGCA GCAGGTGGAG GGCCGGCTCG GCGAGCTCCT GAAATGCCGG CAGCCCGCGC 181 CGCCGACCTC GCAGCCCCCG CGGGCGCAGC CCTTTGCGCA GCCGCCGGGA CCCTGGCCCC 241 TGTCGAGTCC AGGGCCAAGG CTTGTGTTCA ATCGTGTGAA TGGCCGGCGG GCCCCCTCCA 301 CGTCCCCATC CTTCGAGGGG ACCCAGGAGA CCTACACAGT GGCCCACGAG GAGAATGTCC 361 GCTTTGTGTC CGAAGCCTGG CAGCAGGTGC AACAGCAGCT GGATGGTGGC CCAGCCGGTG 421 AGGGCGGGCC AAGGCCTGTG CAGTACGTGG AGAGGACCCC CAATCCCCGG CTGCAGAACT 481 TTGTGCCCAT TGACCTAGAC GAGTGGTGGG CGCAGCAGTT CCTGGCGAGA ATCACCAGCT 541 GTTCCTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 601 gttgcaacga ac