Construct: ORF ccsbBroadEn_04411

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012597.1_s300c1, BRDN0000397989
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM126A (84668)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84668 FAM126A family with sequence simila... NM_032581.4 100% 100%
2 human 84668 FAM126A family with sequence simila... XM_011515589.2 100% 100%
3 human 84668 FAM126A family with sequence simila... NM_001363466.2 72.3% 66.6% (many diffs)
4 human 84668 FAM126A family with sequence simila... NM_001363467.2 71.7% 65.8% (many diffs)
5 human 84668 FAM126A family with sequence simila... XM_011515590.2 66.6% 64.6% (many diffs)
6 mouse 84652 Fam126a family with sequence simila... NM_053090.3 88.4% 91.7% (many diffs)
7 mouse 84652 Fam126a family with sequence simila... XM_011249798.2 88.4% 91.7% (many diffs)
8 mouse 84652 Fam126a family with sequence simila... NM_001310471.1 62.1% 62.5% (many diffs)
9 mouse 84652 Fam126a family with sequence simila... XM_017321188.1 62.1% 62.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1629
ORF length:
1563
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TACTTCAGAG AAAGGGGTTG TGGAGGAATG GTTGTCAGAG TTTAAGACAT
121TACCAGAAAC ATCTTTACCA AATTATGCCA CAAATTTGAA AGACAAGAGT TCTTTAGTTT
181CATCTCTCTA TAAAGTTATC CAGGAGCCAC AAAGTGAGTT GCTAGAACCT GTCTGTCACC
241AGCTCTTTGA ATTCTATCGC AGTGGAGAGG AGCAGTTGCT TCAATTTACG CTGCAATTTC
301TCCCAGAACT AATTTGGTGC TACCTTGCAG TCTCAGCCAG CAGAAATGTG CATAGCAGTG
361GATGCATTGA AGCTCTTCTT CTAGGGGTTT ACAATTTGGA AATAGTTGAC AAACAGGGAC
421ATACCAAAGT ATTGAGTTTT ACGATTCCAT CTTTATCCAA ACCATCTGTA TACCATGAAC
481CTTCCAGCAT TGGGTCCATG GCTCTGACTG AGAGTGCACT ATCCCAGCAT GGTTTGTCAA
541AAGTGGTATA CAGTGGACCT CATCCTCAAA GGGAGATGCT GACAGCACAG AATCGGTTTG
601AAGTGTTGAC ATTCCTTTTG TTGTGTTACA ATGCTGCCTT AACTTACATG CCCAGTGTTT
661CTCTTCAGTC ACTGTGTCAA ATTTGTTCAA GAATCTGTGT TTGTGGATAT CCTCGACAAC
721ATGTAAGAAA ATATAAAGGT ATAAGTAGCA GGATACCAGT TTCTTCAGGA TTCATGGTGC
781AAATGTTAAC AGGGATTTAT TTTGCCTTTT ATAATGGAGA ATGGGATCTA GCTCAAAAAG
841CACTGGATGA TATTATATAC AGAGCCCAGC TAGAATTATA TCCAGAGCCA TTGCTGGTTG
901CTAATGCAAT AAAGGCTTCA TTGCCTCATG GTCCCATGAA ATCTAATAAG GAAGGTACAA
961GGTGTATTCA AGTTGAAATC ACACCAACTT CCTCTCGAAT ATCAAGAAAT GCAGTAACCA
1021GCATGTCAAT AAGGGGTCAT AGGTGGAAAA GACATGGAAA TACAGAATTA ACAGGTCAAG
1081AAGAACTGAT GGAGATATCT GAAGTTGACG AGGGATTTTA TTCCAGGGCT GCGTCTAGTA
1141CCAGCCAGTC GGGTTTATCA AACAGTAGTC ACAATTGTAG TAACAAGCCA AGTATAGGAA
1201AGAACCACAG ACGGTCAGGA GGAAGCAAAA CTGGAGGAAA AGAAAAAGAA ACTACAGGGG
1261AATCTTGCAA AGATCACTTT GCTCGAAAAC AAACTCAGAG AGCCCAAAGT GAGAATCTTG
1321AGCTTCTCTC TTTGAAGAGA CTTACTTTAA CAACCAGCCA ATCCCTACCT AAGCCTAGTA
1381GCCATGGTTT GGCTAAGACC GCAGCGACTG TATTTAGTAA ATCCTTTGAA CAAGTCAGTG
1441GTGTCACAGT CCCACATAAC CCGTCATCTG CTGTTGGTTG TGGGGCTGGG ACAGATGCCA
1501ATAGGTTTTC CGCTTGTAGT CTCCAAGAAG AAAAGCTTAT TTACGTTTCA GAAAGAACTG
1561AACTTCCAAT GAAGCATCAA TCAGGTCAGC AGAGACCTCC TAGTATTAGC ATTACTCTGT
1621CCACAGATTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1681tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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