Construct: ORF ccsbBroadEn_04419
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017847.1_s300c1, BRDN0000386571
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LNX1 (84708)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84708 | LNX1 | ligand of numb-protein X 1 | NM_001126328.3 | 100% | 100% | |
| 2 | human | 84708 | LNX1 | ligand of numb-protein X 1 | XM_005265785.5 | 100% | 100% | |
| 3 | human | 84708 | LNX1 | ligand of numb-protein X 1 | XM_017008776.1 | 100% | 100% | |
| 4 | human | 84708 | LNX1 | ligand of numb-protein X 1 | XM_024454261.1 | 100% | 100% | |
| 5 | human | 84708 | LNX1 | ligand of numb-protein X 1 | XM_024454262.1 | 100% | 100% | |
| 6 | human | 84708 | LNX1 | ligand of numb-protein X 1 | NM_032622.2 | 85.4% | 83.1% | (many diffs) |
| 7 | mouse | 16924 | Lnx1 | ligand of numb-protein X 1 | NM_001159577.1 | 84.1% | 87.9% | (many diffs) |
| 8 | mouse | 16924 | Lnx1 | ligand of numb-protein X 1 | XM_006504254.3 | 84.1% | 87.9% | (many diffs) |
| 9 | mouse | 16924 | Lnx1 | ligand of numb-protein X 1 | XM_017320690.1 | 82.9% | 86.7% | (many diffs) |
| 10 | mouse | 16924 | Lnx1 | ligand of numb-protein X 1 | NM_001159578.1 | 66.7% | 69% | (many diffs) |
| 11 | mouse | 16924 | Lnx1 | ligand of numb-protein X 1 | XM_017320691.1 | 66.7% | 69% | (many diffs) |
| 12 | mouse | 16924 | Lnx1 | ligand of numb-protein X 1 | XR_001784629.1 | 61.5% | (many diffs) | |
| 13 | mouse | 16924 | Lnx1 | ligand of numb-protein X 1 | XR_001784630.1 | 46.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2250
- ORF length:
- 2184
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCAGCCAGAG TCTGCCAACG ATCCTGAACC CCTGTGTGCA GTGTGTGGCC 121 AAGCCCACTC CTTGGAGGAA AACCACTTCT ACAGCTATCC AGAGGAAGTG GATGATGACC 181 TCATCTGCCA CATCTGCCTG CAGGCTTTGC TGGACCCCCT GGACACTCCG TGTGGACACA 241 CCTACTGCAC CCTCTGCCTC ACCAACTTCC TGGTGGAGAA GGACTTCTGT CCCATGGACC 301 GCAAGCCTCT GGTTCTGCAG CACTGCAAGA AGTCCAGCAT CCTGGTCAAC AAACTCCTCA 361 ACAAGCTACT GGTGACCTGC CCATTCAGGG AGCACTGCAC CCAGGTGTTG CAGCGCTGTG 421 ACCTCGAGCA TCACTTTCAA ACCAGCTGTA AAGGTGCCTC CCACTACGGC CTGACCAAAG 481 ATAGGAAGAG GCGCTCACAA GATGGCTGTC CAGACGGCTG TGCGAGCCTC ACAGCCACGG 541 CTCCCTCCCC AGAGGTTTCT GCAGCTGCCA CCATCTCCTT AATGACAGAC GAGCCTGGCC 601 TAGACAACCC TGCCTACGTG TCCTCGGCAG AGGACGGGCA GCCAGCAATC AGCCCAGTGG 661 ACTCTGGCCG GAGCAACCGA ACTAGGGCAC GGCCCTTTGA GAGATCCACT ATTAGAAGCA 721 GATCATTTAA AAAAATAAAT CGAGCTTTGA GTGTTCTTCG AAGGACAAAG AGCGGGAGTG 781 CAGTTGCCAA CCATGCCGAC CAGGGCAGGG AAAATTCTGA AAACACCACT GCCCCTGAAG 841 TCTTTCCAAG GTTGTACCAC CTGATTCCAG ATGGTGAAAT TACCAGCATC AAGATCAATC 901 GAGTAGATCC CAGTGAAAGC CTCTCTATTA GGCTGGTGGG AGGTAGCGAA ACCCCACTGG 961 TCCATATCAT TATCCAACAC ATTTATCGTG ATGGGGTGAT CGCCAGAGAC GGCCGGCTAC 1021 TGCCAGGAGA CATCATTCTA AAGGTCAACG GGATGGACAT CAGCAATGTC CCTCACAACT 1081 ACGCTGTGCG TCTCCTGCGG CAGCCCTGCC AGGTGCTGTG GCTGACTGTG ATGCGTGAAC 1141 AGAAGTTCCG CAGCAGGAAC AATGGACAGG CCCCGGATGC CTACAGACCC CGAGATGACA 1201 GCTTTCATGT GATTCTCAAC AAAAGTAGCC CCGAGGAGCA GCTTGGAATA AAACTGGTGC 1261 GCAAGGTGGA TGAGCCTGGG GTTTTCATCT TCAATGTGCT GGATGGCGGT GTGGCATATC 1321 GACATGGTCA GCTTGAGGAG AATGACCGTG TGTTAGCCAT CAATGGACAT GATCTTCGAT 1381 ATGGCAGCCC AGAAAGTGCG GCTCATCTGA TTCAGGCCAG TGAAAGACGT GTTCACCTCG 1441 TCGTGTCCCG CCAGGTTCGG CAGCGGAGCC CTGACATCTT TCAGGAAGCC GGCTGGAACA 1501 GCAATGGCAG CTGGTCCCCA GGGCCAGGGG AGAGGAGCAA CACTCCCAAG CCCCTCCATC 1561 CTACAATTAC TTGTCATGAG AAGGTGGTAA ATATCCAAAA AGACCCCGGT GAATCTCTCG 1621 GCATGACCGT CGCAGGGGGA GCATCACATA GAGAATGGGA TTTGCCTATC TATGTCATCA 1681 GTGTTGAGCC CGGAGGAGTC ATAAGCAGAG ATGGAAGAAT AAAAACAGGT GACATTTTGT 1741 TGAATGTGGA TGGGGTCGAA CTGACAGAGG TCAGCCGGAG TGAGGCAGTG GCATTATTGA 1801 AAAGAACATC ATCCTCGATA GTACTCAAAG CTTTGGAAGT CAAAGAGTAT GAGCCCCAGG 1861 AAGACTGCAG CAGCCCAGCA GCCCTGGACT CCAACCACAA CATGGCCCCA CCCAGTGACT 1921 GGTCCCCATC CTGGGTCATG TGGCTGGAAT TACCACGGTG CTTGTATAAC TGTAAAGATA 1981 TTGTATTACG AAGAAACACA GCTGGAAGTC TGGGCTTCTG CATTGTAGGA GGTTATGAAG 2041 AATACAATGG AAACAAACCT TTTTTCATCA AATCCATTGT TGAAGGAACA CCAGCATACA 2101 ATGATGGAAG AATTAGATGT GGTGATATTC TTCTTGCTGT CAATGGTAGA AGTACATCAG 2161 GAATGATACA TGCTTGCTTG GCAAGACTGC TGAAAGAACT TAAAGGAAGA ATTACTCTAA 2221 CTATTGTTTC TTGGCCTGGC ACTTTTTTAT ACCCAACTTT CTTGTACAAA GTtggcatta 2281 taagaaagca ttgcttatca atttgttgca acgaac