Construct: ORF ccsbBroadEn_04438
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009570.1_s300c1, BRDN0000456936
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF514 (84874)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84874 | ZNF514 | zinc finger protein 514 | NM_032788.3 | 100% | 100% | |
| 2 | human | 84874 | ZNF514 | zinc finger protein 514 | XM_006712806.2 | 100% | 100% | |
| 3 | human | 84874 | ZNF514 | zinc finger protein 514 | NM_001318005.1 | 84.5% | 84.5% | 1_219del |
| 4 | human | 84874 | ZNF514 | zinc finger protein 514 | XR_001739001.1 | 36.5% | 1_842del;2043_3281del | |
| 5 | human | 84874 | ZNF514 | zinc finger protein 514 | XR_001739002.1 | 35.4% | 1_842del;2043_3389del | |
| 6 | human | 84874 | ZNF514 | zinc finger protein 514 | XR_923048.2 | 35.1% | 1_842del;2043_3414del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1269
- ORF length:
- 1200
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACATTTGAA GATGTGGCTG TGGAATTCAG CCAGTGGGAG TGGGGGCAGC 121 TGAACCCTGC TCAGAAGGAC CTCTACAGGG AGGTGATGCT GGAGAACTTC AGGAACTTGG 181 CCATTCTGGG CCTTCTAGTA TCCAAACCAT ATGTGATCTG CCAGTTGGAG GAAGGGGGTG 241 AGCCCTTCAT GGTGGAGAGA GAAATCTCAA CAGGAGCCCA CTCAGACTGG AAGAGAAGGT 301 CTAAATCCAA GGAATCAATG CCAAGTTGGG GAATTTCCAA AGAAGAATTA TTCCAGGTAG 361 TATCAGTGGA AAAACACATT CAAGATGTGC TGCAGTTCTC GAAGTTGAAA GCAGCCTGCG 421 GTTGTGATGG CCAGTTAGAG ATGCAGCAGA TAAAACAGGA GAGACACCTG AAACAAATGT 481 CAACCATTCA CAAATCTGCC ACCACCCTTA GCAGAGATTA TAAATGGAAT GGATTTGGGA 541 GAAGCTTAGG TTTAAGATCA GTCCTTGTTA ACCAACACAG CATTCTCATG GGAGAAGGAT 601 CTTATAAATG TGATACAGAA TTCAGGCAGA CTTTAGGGGG AAACAACTCT CAGAGAACCC 661 ACCCAGAAAA GAAATCTTGT AAATGTAATG AGTGTGGGAA GTCCTTTCAC TTCCAGTCAG 721 AACTTAGGCG CCATCAGCGA TGTCACACTG GAGAAAAGCC GTATGAATGC AGTGACTGTG 781 GAAGAGCCTT TGGTCATATT TCATCCCTTA TTAAACATCA AAGAACTCAT ACTGGAGAAA 841 AGCCCTATGA ATGCAGTGAA TGTGGGAGAG CCTTCAGCCA GAGTTCGTCT CTTGTTCTGC 901 ACTATAGATT TCACACTGGA GAGAAACCCT ACAAATGTAA TGAATGTGGA CGAGCCTTTG 961 GTCACACTTC ATCCCTTATT AAGCATCAGA GGACTCATAC TGGAGAAAAG CCCTATGAAT 1021 GCCGGGAATG TGGGAGAACC TTCAGCCAGA GCTCATCACT CATTGTGCAT TACAGATTTC 1081 ATACTGGAGA GAAACCTTAC AAATGTAATA AATGTGGGAG AGCCTTCAGC CAGAGTTCAT 1141 CTCTCACTCA ACATTACAGA TTTCACACTG GAGAGAAACC CTACAAATGT AATGAGTGTG 1201 GAAGGGCCTT TGCTCATACT GCATCCCTTA TTAAACATCA GAGAAGTCAT GCTGGAAAAA 1261 AAACCCTATT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa 1321 tttgttgcaa cgaac