Transcript: Human XR_001739002.1

PREDICTED: Homo sapiens zinc finger protein 514 (ZNF514), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF514 (84874)
Length:
3389
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001739002.1
NBCI Gene record:
ZNF514 (84874)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001739002.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000016832 CTCATACTGCATCCCTTATTA pLKO.1 1987 3UTR 100% 15.000 21.000 N ZNF514 n/a
2 TRCN0000016831 CTGGGCCTTCTAGTATCCAAA pLKO.1 960 3UTR 100% 4.950 3.960 N ZNF514 n/a
3 TRCN0000016830 GTCACACTTCATCCCTTATTA pLKO.1 1735 3UTR 100% 15.000 10.500 N ZNF514 n/a
4 TRCN0000016829 TGGTCATATTTCATCCCTTAT pLKO.1 1565 3UTR 100% 10.800 7.560 N ZNF514 n/a
5 TRCN0000016828 CCAAGGAATCAATGCCAAGTT pLKO.1 1081 3UTR 100% 4.950 3.465 N ZNF514 n/a
6 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 1690 3UTR 100% 13.200 6.600 Y Zfp934 n/a
7 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 1690 3UTR 100% 13.200 6.600 Y 2810408B13Rik n/a
8 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 1690 3UTR 100% 13.200 6.600 Y EG668616 n/a
9 TRCN0000016346 CACTGGAGAGAAACCCTACAA pLKO.1 1688 3UTR 100% 4.950 2.475 Y ZNF254 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001739002.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04438 pDONR223 100% 35.4% None 1_842del;2043_3389del n/a
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