Construct: ORF ccsbBroadEn_04482
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011073.1_s300c1, BRDN0000398140
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAJC14 (85406)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 85406 | DNAJC14 | DnaJ heat shock protein fam... | NM_032364.5 | 100% | 100% | |
| 2 | mouse | 74330 | Dnajc14 | DnaJ heat shock protein fam... | NM_028873.4 | 86.4% | 85.5% | (many diffs) |
| 3 | mouse | 74330 | Dnajc14 | DnaJ heat shock protein fam... | XM_006514249.3 | 86.4% | 85.5% | (many diffs) |
| 4 | mouse | 74330 | Dnajc14 | DnaJ heat shock protein fam... | XM_006514250.2 | 86.4% | 85.5% | (many diffs) |
| 5 | mouse | 74330 | Dnajc14 | DnaJ heat shock protein fam... | XM_006514251.1 | 86.4% | 85.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2175
- ORF length:
- 2106
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCCAGAAG CACCCCGGAG AAAGAGGGTT GTATGGAGCC CACCACAGTG 121 GTGGTGCCTC CCTCAGGACT TTAGGACCCT CCGTGGACCC TGAAATACCT TCATTCTCAG 181 GACTCAGGGA CTCAGCAGGG ACTGCTCCTA ATGGTACCCG CTGCCTCACA GAGCACTCTG 241 GTCCTAAGCA CACACAGCAC CCAAACCCAG CCCATTGGTT GGACCCAAGC CATGGCCCCC 301 CAGGGGGTCC AGGACCACCT AGAGATGCAG AGGACCCTGA TCAGAGTGAG ACGTCTTCAG 361 AAGAAGAATC AGGAGTGGAC CAGGAACTCT CAAAAGAAAA CGAGACTGGG AACCAGAAGG 421 ATGGGAACTC TTTTCTTTCC ATTCCATCTG CTTGCAACTG CCAGGGAACA CCTGGAATTC 481 CAGAAGGGCC TTACTCTGAG GGAGGAAATG GTTCTTCTAG CAACTTTTGC CACCACTGTA 541 CCTCTCCAGC TTTGGGGGAA GATGAGTTGG AAGAGGAATA TGATGATGAA GAATCTCTCA 601 AGTTCCCCAG TGATTTTTCA CGTGTGTCCA GCGGAAAGAA ACCCCCATCC CGGAGACAGC 661 GGCACCGCTT TCCAACGAAG GAGGATACTC GGGAGGGTGG ACGTAGGGAT CCCAGGTCCC 721 CTGGTCGACA TCGGCTGGGT CGGAAACGAA GTCAGGCAGA TAAGCGCAAA GGCCTGGGAT 781 TGTGGGGAGC CGAGGAACTA TGTCAACTTG GACAGGCAGG CTTTTGGTGG CTGATTGAAC 841 TGCTGGTATT GGTGGGAGAG TACGTAGAAA CTTGTGGCCA TCTCATCTAT GCCTGCAGGC 901 AACTGAAAAG CAGTGATTTG GACCTTTTTC GAGTTTGGAT GGGAGTGTGG ACAGGGCGGT 961 TAGGGGGCTG GGCCCAGGTC ATGTTTCAGT TTCTAAGCCA GGGGTTTTAC TGTGGAGTAG 1021 GACTGTTTAC TCGTTTTCTT AAGCTGCTGG GTGCTTTGCT GCTCCTGGCT CTGGCCCTCT 1081 TTTTGGGCTT TCTACAGTTG GGATGGCGGT TTCTGGTGGG ACTAGGTGAC CGGTTAGGCT 1141 GGAGGGATAA GGCTACCTGG CTCTTCTCTT GGCTGGATTC TCCAGCCTTG CAGCGTTGCT 1201 TGACTCTGCT GAGAGATAGC AGGCCATGGC AGCGGCTGGT AAGAATAGTT CAGTGGGGCT 1261 GGCTGGAGTT GCCTTGGGTC AAGCAGAATA TTAATAGGCA GGGGAATGCA CCTGTAGCTA 1321 GTGGGCGCTA CTGCCAGCCT GAAGAGGAAG TGGCTCGACT CTTGACCATG GCTGGGGTTC 1381 CTGAGGATGA GCTAAACCCT TTCCATGTAC TGGGGGTTGA GGCCACAGCA TCAGATGTTG 1441 AACTGAAGAA GGCCTATAGA CAGCTGGCAG TGATGGTTCA TCCTGACAAA AATCATCATC 1501 CCCGGGCTGA GGAGGCCTTC AAGGTTTTGC GAGCAGCTTG GGACATTGTC AGCAATGCTG 1561 AAAAGCGAAA GGAGTATGAG ATGAAACGAA TGGCAGAGAA TGAGCTGAGC CGGTCAGTAA 1621 ATGAGTTTCT GTCCAAGCTG CAAGATGACC TCAAGGAGGC AATGAATACT ATGATGTGTA 1681 GCCGATGCCA AGGAAAGCAT AGGAGGTTTG AAATGGACCG GGAACCTAAG AGTGCCAGAT 1741 ACTGTGCTGA GTGTAATAGG CTGCATCCTG CTGAGGAAGG AGACTTTTGG GCAGAGTCAA 1801 GCATGTTGGG CCTCAAGATC ACCTACTTTG CACTGATGGA TGGAAAGGTG TATGACATCA 1861 CAGAGTGGGC TGGATGCCAG CGTGTAGGTA TCTCCCCAGA TACCCACAGA GTCCCCTATC 1921 ACATCTCATT TGGTTCTCGG ATTCCAGGCA CCAGAGGGCG GCAGAGAGCC ACCCCAGATG 1981 CCCCTCCTGC TGATCTTCAG GATTTCTTGA GTCGGATCTT TCAAGTACCC CCAGGGCAGA 2041 TGCCCAATGG GAACTTCTTT GCAGCTCCTC AGCCTGCCCC TGGAGCCGCT GCAGCCTCTA 2101 AGCCCAACAG CACAGTACCC AAGGGAGAAG CCAAACCTAA GCGGCGGAAG AAAGTGAGGA 2161 GGCCCTTCCA ACGTTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2221 tatcaatttg ttgcaacgaa c