Construct: ORF ccsbBroadEn_04491

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009154.1_s300c1, BRDN0000395978
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NAV1 (89796)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 89796 NAV1 neuron navigator 1 XM_006711611.2 40.3% 40.3% 1_2478del
2 human 89796 NAV1 neuron navigator 1 XM_017002752.1 37.8% 37.8% 1_2748del
3 human 89796 NAV1 neuron navigator 1 XM_006711610.2 37.8% 37.8% 1_2757del
4 human 89796 NAV1 neuron navigator 1 NM_001167738.2 37.6% 37.6% 1_2772del
5 human 89796 NAV1 neuron navigator 1 XM_006711609.2 37.6% 37.6% 1_2781del
6 human 89796 NAV1 neuron navigator 1 XM_011510102.2 30.9% 30.9% 1_3750del
7 human 89796 NAV1 neuron navigator 1 XM_011510101.2 30.8% 30.8% 1_3759del
8 human 89796 NAV1 neuron navigator 1 XM_017002751.2 30.7% 30.7% 1_3774del
9 human 89796 NAV1 neuron navigator 1 XM_011510100.2 30.7% 30.7% 1_3783del
10 human 89796 NAV1 neuron navigator 1 XM_011510099.2 29.9% 29.9% 1_3921del
11 human 89796 NAV1 neuron navigator 1 XM_011510098.2 29.9% 29.9% 1_3930del
12 human 89796 NAV1 neuron navigator 1 XM_011510097.2 29.8% 29.8% 1_3945del
13 human 89796 NAV1 neuron navigator 1 NM_020443.4 29.7% 29.7% 1_3954del
14 human 89796 NAV1 neuron navigator 1 XM_024450645.1 29.4% 29.4% 1_4023del
15 mouse 215690 Nav1 neuron navigator 1 XM_006529380.3 34.4% 36.8% (many diffs)
16 mouse 215690 Nav1 neuron navigator 1 NM_173437.2 27.1% 29.1% (many diffs)
17 mouse 215690 Nav1 neuron navigator 1 XM_006529379.3 26.9% 28.9% (many diffs)
18 mouse 215690 Nav1 neuron navigator 1 XM_006529378.3 26.7% 28.6% (many diffs)
19 mouse 215690 Nav1 neuron navigator 1 XM_006529377.3 24.1% 25.8% (many diffs)
20 mouse 215690 Nav1 neuron navigator 1 XM_006529376.3 24% 25.8% (many diffs)
21 mouse 215690 Nav1 neuron navigator 1 XM_006529375.3 24% 25.7% (many diffs)
22 mouse 215690 Nav1 neuron navigator 1 XM_006529374.3 23.6% 25.3% (many diffs)
23 mouse 215690 Nav1 neuron navigator 1 XM_017319809.1 23.6% 25.3% (many diffs)
24 mouse 215690 Nav1 neuron navigator 1 XM_006529373.3 23.5% 25.2% (many diffs)
25 mouse 215690 Nav1 neuron navigator 1 XM_006529372.3 23.5% 25.1% (many diffs)
26 mouse 215690 Nav1 neuron navigator 1 XM_006529371.3 23.4% 25.1% (many diffs)
27 mouse 215690 Nav1 neuron navigator 1 XM_006529369.3 23.4% 25.1% (many diffs)
28 mouse 215690 Nav1 neuron navigator 1 XM_006529370.3 23.4% 25.1% (many diffs)
29 mouse 215690 Nav1 neuron navigator 1 XM_017319805.1 23.4% 25.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1743
ORF length:
1677
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAATAAAG
61TTGGCATGAA GCTTACAGAC ATCCGCTTGG AGGCCCTCAA CTCTGCCCAC CAACTGGATC
121AGCTTCGGGA GACCATGCAC AACATGCAGT TGGAGGTGGA CCTGCTGAAA GCAGAGAATG
181ACCGACTGAA GGTAGCCCCA GGCCCCTCAT CAGGCTCCAC TCCAGGGCAG GTCCCTGGAT
241CATCTGCATT ATCTTCCCCA CGCCGCTCCC TAGGCCTGGC ACTCACCCAT TCCTTCGGCC
301CCAGTCTTGC AGACACAGAC CTGTCACCCA TGGATGGCAT CAGTACTTGT GGTCCAAAGG
361AGGAAGTGAC CCTCCGGGTG GTGGTGAGGA TGCCCCCGCA GCACATCATC AAAGGGGACT
421TGAAGCAGCA GGAATTCTTC CTGGGCTGTA GCAAGGTCAG TGGAAAAGTT GACTGGAAGA
481TGCTGGATGA AGCTGTTTTC CAAGTGTTCA AGGACTATAT TTCTAAAATG GACCCAGCCT
541CTACCCTGGG ACTAAGCACT GAGTCCATCC ATGGCTACAG CATCAGCCAC GTGAAACGAG
601TGTTGGATGC AGAGCCCCCC GAGATGCCTC CTTGCCGTCG AGGTGTCAAT AACATATCAG
661TCTCCCTCAA AGGTCTGAAG GAGAAATGCG TCGACAGCCT GGTGTTCGAG ACGCTGATCC
721CCAAGCCGAT GATGCAGCAC TACATAAGCC TCCTGCTGAA GCACCGGCGC CTCGTCCTCT
781CGGGCCCCAG CGGCACGGGC AAGACCTACC TGACCAATCG CTTGGCCGAG TACCTGGTGG
841AGCGCTCTGG CCGTGAGGTC ACAGAGGGCA TCGTCAGCAC CTTCAACATG CACCAGCAGT
901CTTGCAAGGA TCTGCAACTG TATCTTTCCA ACCTAGCCAA CCAGATAGAC CGGGAAACAG
961GAATTGGGGA TGTGCCCCTG GTGATTCTAT TGGATGACCT GAGTGAAGCA GGCTCCATCA
1021GTGAGTTGGT CAATGGGGCC CTCACCTGCA AGTATCATAA ATGTCCCTAT ATTATAGGTA
1081CCACCAATCA GCCTGTAAAA ATGACACCCA ACCATGGCTT GCACTTGAGC TTCAGGATGT
1141TGACCTTCTC CAACAACGTG GAGCCAGCCA ATGGCTTCCT GGTTCGTTAC CTGAGGAGGA
1201AGCTGGTAGA GTCAGACAGC GACATCAATG CCAACAAGGA AGAGCTGCTT CGGGTGCTCG
1261ACTGGGTACC CAAGCTGTGG TATCATCTCC ACACCTTCCT TGAGAAGCAC AGCACCTCAG
1321ACTTCCTCAT CGGCCCTTGC TTCTTTCTGT CGTGTCCCAT TGGCATTGAG GACTTCCGGA
1381CCTGGTTCAT TGACCTGTGG AACAACTCTA TCATTCCCTA TCTACAGGAA GGAGCCAAGG
1441ATGGGATAAA GGTCCATGGA CAGAAAGCTG CTTGGGAGGA CCCAGTGGAA TGGGTCCGGG
1501ACACACTTCC CTGGCCATCA GCCCAACAAG ACCAATCAAA GCTGTACCAC CTGCCCCCAC
1561CCACCGTGGG CCCTCACAGC ATTGCCTCAC CTCCCGAGGA TAGGACAGTC AAAGACAGCA
1621CCCCAAGTTC TCTGGACTCA GATCCTCTGA TGGCCATGCT GCTGAAACTT CAAGAAGCTG
1681CCAACTACAT TGAGTCTCCA GATCGAGAAA CCATCCTGGA CCCCAACCTT CAGGCAACAC
1741TTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1801gcaacgaac

Download FASTA (ORF) (Full)

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