Construct: ORF ccsbBroadEn_04510

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005289.1_s300c1, BRDN0000393773
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EFCAB12 (90288)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90288 EFCAB12 EF-hand calcium binding dom... NM_207307.3 100% 100%
2 human 90288 EFCAB12 EF-hand calcium binding dom... XM_011513293.2 92.1% 92.1% (many diffs)
3 human 90288 EFCAB12 EF-hand calcium binding dom... XM_011513294.2 91.9% 91.9% (many diffs)
4 human 90288 EFCAB12 EF-hand calcium binding dom... XM_011513295.2 89.6% 89.5% (many diffs)
5 human 90288 EFCAB12 EF-hand calcium binding dom... XM_011513297.2 70.1% 66.7% (many diffs)
6 human 90288 EFCAB12 EF-hand calcium binding dom... XM_011513298.1 54.2% 52.2% (many diffs)
7 human 90288 EFCAB12 EF-hand calcium binding dom... XM_011513299.2 52.9% 50.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1782
ORF length:
1716
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CGACGACTAT GAAGCGTACC ACAGTCTGTT CTTGTCGCTG CTCGGACTCT
121GCCCGTCTAA GACTCCCATC AATGAAAATG CTCCCGTCTT TGATCCTGAA CCGGTCATTG
181CCCACTGCTT CAAGCAGTTC CAGCAGAAGG ACTTCCGCCT GCCTCAGACC CGCCGGCGAA
241TCATCATGGT GCCTCGCAAG GAGGATCAGA CACCCCTTAA TCCTGCATCC CAACCTCAGG
301CTCCCCCAAA GCCCATCCCC AGCTTCAAAG TTCTGGAAGC TAGAGATATC CAAGAGCAGC
361CAGAGGACAG GAAGACCTGG CTGAGCCAGA GGTCGAAGCT GCGGCAGGAG CTAGAGTCCT
421TTGGTGATGT AAAGAGGTGG CTGGAGAACA AGCCCAGCAT CACGCCTTCA GAGGCCAAGG
481TCTTACACAT GATCCACGAG GAGCAGAGTG CCCAGCCAAA TGCCTCCCAG GCAACTACCA
541GGACCACCAG GAAGAAAGCC CCCAGGCTCT CCCGGCTGTC CCGCCAGATG GTGCCCCAGC
601TCCAGCTGCC CGAGCCCCCT GCCCTGTCGG TCATGTACTC CTACCTGCAT AGCCGCAAGA
661TCAAGATCCT GGAGATATTT CACAAGGTGG GCCAGGGTGA GAACCAGAGA ATCACCAGGG
721AGGAGTTCAT CGCGGCTGTA AAGGCAGTCG GAGTCCCTCT GAAGAACCAA GAGGTGGAGG
781ATATAGTGAT CTACCTCAGC TCTCTTGGGA AGCACAACAC CATCACCATG GATATCCTGG
841CCAATACCTA CAAGCAGTGG TCTATGGCTC AGCAAAGGAG CAGCCTGGCC ACTGCAAGGG
901AGCATTATAT CTTGGCCAAG CACAGAGATT CCCTGAAGGG TCCGCTCAAG AAGCAGGAGG
961TGGATTCAGC CCCACAGCTT CCCAAAGTGG ACCTACTGAC GGTGCCTGCA GTCGACACGC
1021AGATGGAGAC GCGGCCCATG ACCCTGGAGG AGATGGAGGA AGTGGGCAAG CGGTACCGCG
1081AGCGGCAGCG ACAGCACAAG CTCACGATCC CCTCCATCCA GTACACGGAG CAATGTCACC
1141TGGTGCGCTG TGGGAATCGG CACTTTGATG AGCACTGCCT CCCGTCCACC ATCCACGGGG
1201ATATGAGGGA GCTCATTGAC TCGGCCCGCA GGCACAACTT TCTGGTCTAC CTGCAATGCT
1261GGAAGCTCTG TAAGTCCTAT GGCCTCCCGC TGACAGAGGA CATCCTCATG AAAGCCTTGC
1321TGTACCCAGG AGACAAGATC ATTTTCCAGA TGGACAAAGT GTGCCCCATC CGGCAGCCGG
1381GAGGCTACTA CTCTGACTGG AAGGTCTTTT CTCCGAATCT GGCTCTGCTC CGGTCCCAGG
1441GCCCTGGCAA GTCTAAGAGG ACTGACAAGA AAACGCCAAA GAAAAGCAAG AAAATGCGCT
1501TTAAGGAGTT TGAGGAATTT ACCAGGAAGC TGAAGGTGAA GAGGTCCAGT GGTCTGCAGC
1561AAACACACCC CAATTCCTTC TGGCCGGGTC ATCTTCTGGA TAAGCTGCAG CTCTACCTGC
1621CCACTGTGGC CACAGACCGG AGCCTGGCGC TCTTCAGTTG TGTTCAACAC CAGCCCCATG
1681TCTACCCAGC CACCTACCAC CCTGACCACT GGTGGCCCCT TAGGAACAAG AACTACATGA
1741CCCACGCCCA TTATGATGCC GCCAAGGTGT ACTACATCAA CTACCCAACT TTCTTGTACA
1801AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)