Construct: ORF ccsbBroadEn_04543

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006346.1_s300c1, BRDN0000391151
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP23 (91419)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91419 ATP23 ATP23 metallopeptidase and ... NM_033276.4 100% 100%
2 human 91419 ATP23 ATP23 metallopeptidase and ... NM_001320408.2 77% 72.4% (many diffs)
3 human 91419 ATP23 ATP23 metallopeptidase and ... XM_011538976.2 70.7% 69.5% (many diffs)
4 human 91419 ATP23 ATP23 metallopeptidase and ... XM_017020206.1 70.7% 70.7% 0_1ins216
5 human 91419 ATP23 ATP23 metallopeptidase and ... NM_001320409.2 52% 52% 0_1ins354
6 human 91419 ATP23 ATP23 metallopeptidase and ... NM_001320410.2 52% 52% 0_1ins354
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
804
ORF length:
738
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGGAGCTCCG GACGAGCGCC GGCGGGGCCC CGCGGCAGGG GAGCAGCTGC
121AGCAGCAACA CGTCTCTTGC CAGGTCTTCC CCGAGCGTCT GGCCCAGGGG AATCCCCAGC
181AAGGGTTCTT CTCCAGCTTC TTCACCAGCA ACCAGAAGTG CCAGCTTAGG CTCCTGAAGA
241CGCTGGAGAC AAATCCATAT GTCAAACTTC TGCTTGATGC TATGAAACAC TCAGGTTGTG
301CTGTTAACAA AGATAGACAC TTTTCTTGCG AAGACTGTAA TGGAAATGTC AGTGGAGGTT
361TTGATGCTTC AACATCTCAG ATAGTTTTGT GCCAGAATAA TATCCATAAT CAGGCCCATA
421TGAACAGAGT GGTCACACAC GAGCTTATTC ATGCATTTGA TCATTGTCGT GCCCATGTCG
481ACTGGTTCAC CAACATCAGA CATTTGGCGT GCTCAGAGGT TCGAGCTGCT AACCTTAGTG
541GAGACTGCTC ACTTGTCAAT GAAATATTCA GGTTACATTT TGGATTAAAA CAACACCACC
601AGACTTGTGT GCGAGACAGA GCCACTCTTT CTATCCTGGC TGTTAGGAAT ATCAGCAAAG
661AAGTAGCTAA AAAGGCTGTT GATGAAGTTT TTGAATCTTG TTTCAATGAC CATGAACCTT
721TTGGAAGGAT CCCACATAAC AAGACTTATG CAAGATATGC TCACAGAGAC TTTGAAAACC
781GTGATCGGTA TTATTCAAAT ATATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
841agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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