Construct: ORF ccsbBroadEn_04554

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016008.1_s300c1, BRDN0000389589
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT12 (91683)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91683 SYT12 synaptotagmin 12 NM_001177880.2 100% 100%
2 human 91683 SYT12 synaptotagmin 12 NM_177963.4 100% 100%
3 human 91683 SYT12 synaptotagmin 12 XM_011545347.1 100% 100%
4 human 91683 SYT12 synaptotagmin 12 XM_006718737.4 95.8% 95.8% 1_54del
5 human 91683 SYT12 synaptotagmin 12 XM_011545346.3 92.3% 92.3% 1_105del
6 human 91683 SYT12 synaptotagmin 12 XM_024448766.1 86.4% 86.4% 1_198del
7 human 91683 SYT12 synaptotagmin 12 NM_001318773.2 72.6% 72.6% 0_1ins345
8 human 91683 SYT12 synaptotagmin 12 NM_001318775.2 72.6% 72.6% 0_1ins345
9 human 91683 SYT12 synaptotagmin 12 XM_017018547.1 72.6% 72.6% 0_1ins345
10 human 91683 SYT12 synaptotagmin 12 XM_017018548.1 72.6% 72.6% 0_1ins345
11 mouse 171180 Syt12 synaptotagmin XII NM_134164.5 87.7% 95% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1329
ORF length:
1263
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGTGGATGTG GCAGAATACC ATCTGAGCGT CATCAAGAGC CCCCCTGGCT
121GGGAGGTGGG TGTCTATGCT GCAGGGGCCC TGGCCCTGCT GGGAATCGCA GCTGTGAGCC
181TGTGGAAGCT CTGGACGTCG GGGAGCTTCC CCAGCCCCTC TCCGTTCCCC AATTACGACT
241ACAGGTACCT TCAGCAGAAG TACGGCGAGA GCTGCGCAGA GGCCAGGGAG AAGAGAGTGC
301CTGCCTGGAA TGCCCAGCGG GCCAGCACGC GGGGACCACC CAGCCGCAAA GGCAGTCTCA
361GCATTGAGGA CACCTTTGAG AGCATCAGTG AACTGGGGCC TCTGGAGCTG ATGGGCCGGG
421AGTTGGACCT GGCCCCCTAT GGGACCCTCC GGAAGTCCCA GTCGGCCGAC TCCCTGAACT
481CCATCTCCTC CGTGAGCAAC ACCTTTGGGC AGGACTTCAC ACTGGGCCAG GTGGAGGTGA
541GCATGGAGTA CGACACTGCC TCCCACACGC TGAACGTGGC GGTGATGCAG GGCAAGGACC
601TCCTGGAGCG GGAGGAGGCC AGCTTCGAGT CCTGCTTCAT GCGCGTCAGC CTGCTGCCGG
661ACGAGCAGAT CGTGGGCATT TCTCGGATCC AGAGAAATGC CTACTCCATC TTCTTTGATG
721AGAAGTTCTC CATCCCCCTG GATCCCACAG CCCTGGAGGA GAAGAGCCTG CGGTTTTCTG
781TATTTGGCAT CGATGAGGAT GAGCGCAACG TCAGCACGGG GGTGGTGGAG CTGAAGCTTT
841CTGTGCTTGA CCTCCCGCTG CAGCCCTTCA GTGGCTGGCT CTATTTACAG GACCAGAACA
901AGGCCGCCGA TGCTGTGGGG GAGATCCTGC TCTCCCTCAG CTACCTCCCC ACAGCCGAGC
961GCCTCACCGT GGTCGTGGTT AAGGCCAAGA ACCTCATCTG GACCAACGAC AAGACCACAG
1021CGGACCCCTT CGTCAAGGTG TACCTGCTGC AGGATGGGAG GAAGATGAGC AAAAAGAAGA
1081CAGCCGTGAA GAGGGATGAC CCCAACCCGG TGTTCAACGA AGCCATGATC TTCTCGGTGC
1141CAGCCATTGT GCTCCAGGAC CTGTCTCTCC GCGTGACGGT GGCTGAGAGC AGCAGCGACG
1201GCCGTGGGGA CAACGTGGGC CATGTCATCA TTGGGCCGTC AGCCAGTGGC ATGGGAACCA
1261CACATTGGAA CCAGATGTTG GCCACGCTGC GCAGGCCCGT GTCCATGTGG CACGCTGTCC
1321GGCGAAACTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1381tttgttgcaa cgaac

Download FASTA (ORF) (Full)