Construct: ORF ccsbBroadEn_04559

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002995.1_s300c1, BRDN0000390638
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YTHDC1 (91746)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91746 YTHDC1 YTH domain containing 1 NM_001031732.4 99.9% 100% 198T>A
2 human 91746 YTHDC1 YTH domain containing 1 NM_001330698.2 98.8% 98.9% 198T>A;1718_1741del
3 human 91746 YTHDC1 YTH domain containing 1 NM_133370.4 97.4% 97.5% 198T>A;971_972ins54
4 human 91746 YTHDC1 YTH domain containing 1 XM_005265708.3 96.4% 96.4% 198T>A;971_972ins54;1664_1687del
5 human 91746 YTHDC1 YTH domain containing 1 XM_017008832.2 95.4% 94.1% (many diffs)
6 human 91746 YTHDC1 YTH domain containing 1 XM_005265707.3 94.4% 93.1% (many diffs)
7 human 91746 YTHDC1 YTH domain containing 1 XM_017008833.2 92.9% 91.7% (many diffs)
8 human 91746 YTHDC1 YTH domain containing 1 XR_001741346.2 46.6% (many diffs)
9 human 91746 YTHDC1 YTH domain containing 1 XR_001741347.2 46.3% (many diffs)
10 human 91746 YTHDC1 YTH domain containing 1 XR_001741348.2 45.4% (many diffs)
11 mouse 231386 Ythdc1 YTH domain containing 1 NM_001347375.1 92.7% 96.8% (many diffs)
12 mouse 231386 Ythdc1 YTH domain containing 1 NM_177680.3 91.7% 95.7% (many diffs)
13 mouse 231386 Ythdc1 YTH domain containing 1 XM_006534864.1 91.2% 95.2% (many diffs)
14 mouse 231386 Ythdc1 YTH domain containing 1 NM_001347376.1 90.2% 94.3% (many diffs)
15 mouse 231386 Ythdc1 YTH domain containing 1 XM_006534863.2 90.2% 94.2% (many diffs)
16 mouse 231386 Ythdc1 YTH domain containing 1 XM_017320843.1 89.2% 93.3% (many diffs)
17 mouse 231386 Ythdc1 YTH domain containing 1 XM_006534866.1 88.7% 92.8% (many diffs)
18 mouse 231386 Ythdc1 YTH domain containing 1 XM_006534865.2 87.8% 91.8% (many diffs)
19 mouse 231386 Ythdc1 YTH domain containing 1 XM_006534867.3 82.8% 84.8% (many diffs)
20 mouse 231386 Ythdc1 YTH domain containing 1 XR_001784676.1 44.7% (many diffs)
21 mouse 231386 Ythdc1 YTH domain containing 1 XR_389269.3 41.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2247
ORF length:
2181
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCTGACAGT CGGGAGGAGA AAGATGGAGA ACTTAATGTT CTGGATGATA
121TTTTAACTGA AGTACCAGAA CAAGATGATG AACTGTATAA TCCAGAGAGT GAACAAGATA
181AAAATGAGAA AAAGGGATCA AAAAGAAAAA GTGATCGAAT GGAATCTACT GATACCAAAC
241GACAAAAGCC TTCTGTCCAT TCAAGACAAC TGGTTTCTAA GCCACTGAGC TCATCTGTTA
301GCAATAACAA AAGAATAGTT AGTACAAAAG GAAAGTCAGC CACAGAGTAT AAAAATGAGG
361AATATCAAAG ATCTGAAAGA AACAAGCGTC TAGATGCTGA TCGGAAAATT CGTCTATCAA
421GTAGTGCCTC CAGAGAACCT TATAAGAATC AACCTGAAAA AACCTGTGTC CGGAAAAGGG
481ATCCTGAAAG GAGGGCCAAA TCTCCTACGC CAGATGGTTC TGAGAGAATT GGGCTTGAAG
541TGGATAGACG TGCAAGCAGA TCCAGCCAGT CTTCTAAGGA AGAAGTGAAC TCTGAAGAAT
601ATGGCTCTGA CCATGAGACT GGCAGCAGTG GTTCTTCTGA TGAGCAAGGG AACAACACTG
661AGAATGAGGA GGAAGGAGTG GAAGAAGATG TGGAGGAAGA TGAAGAAGTA GAAGAAGATG
721CAGAAGAAGA TGAAGAGGTG GATGAAGATG GAGAGGAGGA GGAGGAAGAG GAGGAGGAGG
781AAGAGGAGGA GGAGGAGGAG GAAGAAGAAG AATATGAACA GGATGAGAGA GACCAGAAAG
841AGGAGGGAAA TGATTATGAC ACTCGAAGTG AGGCCAGTGA CTCTGGTTCT GAATCTGTTT
901CCTTCACAGA TGGGTCTGTC AGATCTGGTT CAGGCACAGA TGGATCAGAT GAGAAAAAGA
961AGGAAAGGAA GAGAGCTAGA GGCATATCTC CAATTGTTTT TGATAGAAGT GGAAGCTCTG
1021CATCAGAGTC ATATGCAGGT TCAGAAAAGA AGCATGAGAA ATTATCATCT TCCGTTCGTG
1081CTGTCCGAAA AGATCAAACC AGTAAACTCA AATATGTGCT TCAAGATGCA AGATTTTTCC
1141TCATAAAGAG TAACAACCAT GAGAATGTGT CTCTTGCCAA AGCGAAGGGT GTATGGTCCA
1201CGCTCCCTGT AAATGAGAAG AAATTAAATC TTGCATTTAG ATCTGCAAGG AGTGTTATCT
1261TAATATTTTC TGTCAGAGAG AGTGGAAAAT TTCAAGGGTT TGCAAGACTT TCTTCAGAAT
1321CACATCACGG AGGATCTCCT ATACACTGGG TGCTTCCAGC AGGAATGAGT GCTAAAATGC
1381TGGGAGGTGT CTTTAAAATT GACTGGATTT GCAGGCGTGA ATTACCCTTC ACTAAGTCGG
1441CTCATCTCAC CAATCCTTGG AATGAACATA AACCAGTAAA GATCGGACGT GATGGACAGG
1501AAATTGAACT TGAATGTGGA ACCCAGCTTT GTCTTCTGTT TCCCCCCGAT GAAAGTATTG
1561ACTTGTATCA GGTCATTCAT AAAATGCGTC ACAAGAGAAG AATGCATTCT CAGCCCCGAT
1621CACGAGGACG TCCATCCCGT CGAGAACCAG TCCGGGATGT GGGAAGGCGT CGACCAGAAG
1681ATTATGATAT TCATAACAGC AGAAAGAAAC CAAGGATTGA CTATCCCCCT GAGTTTCACC
1741AGAGACCAGG GTATTTAAAG GATCCACGAT ACCAGGAAGT GGACAGACGA TTTTCAGGAG
1801TTCGCCGAGA TGTGTTTTTA AATGGGTCCT ACAATGATTA TGTGAGGGAA TTTCATAACA
1861TGGGACCACC ACCACCTTGG CAAGGAATGC CCCCTTACCC AGGAATGGAA CAACCTCCAC
1921ACCATCCTTA CTATCAGCAC CATGCTCCAC CTCCTCAAGC TCATCCCCCT TACTCAGGAC
1981ATCATCCAGT ACCACATGAA GCAAGATACA GAGATAAACG AGTACATGAT TATGATATGA
2041GGGTGGATGA TTTCCTTCGT CGCACACAAG CTGTTGTCAG TGGCCGGAGA AGTAGACCCC
2101GTGAAAGAGA CCGGGAACGA GAGCGAGACC GCCCTAGAGA TAACAGACGA GACAGAGAGC
2161GAGATAGAGG ACGTGATAGA GAAAGAGAAA GAGAGCGATT ATGTGATCGA GACAGAGACC
2221GAGGGGAGAG AGGTCGATAT AGAAGATACC CAACTTTCTT GTACAAAGTt ggcattataa
2281gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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