Construct: ORF ccsbBroadEn_04565

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011780.1_s300c1, BRDN0000395728
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COG7 (91949)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91949 COG7 component of oligomeric gol... NM_153603.4 100% 100%
2 human 91949 COG7 component of oligomeric gol... XM_017023870.1 91.5% 91.5% 0_1ins195
3 human 91949 COG7 component of oligomeric gol... XR_429680.2 75.1% 1_221del;2367_2681del;2847_3073del
4 human 91949 COG7 component of oligomeric gol... XR_002957852.1 72.5% 1_221del;2367_2784del;2950_3186del
5 mouse 233824 Cog7 component of oligomeric gol... NM_001033318.3 88.1% 92.4% (many diffs)
6 mouse 233824 Cog7 component of oligomeric gol... XM_006507699.2 86.7% 91% (many diffs)
7 mouse 233824 Cog7 component of oligomeric gol... XM_006507700.2 84.2% 88.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2376
ORF length:
2310
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CTTCTCCAAG TTCCTGGCAG ACGACTTCGA CGTGAAGGAG TGGATCAATG
121CGGCCTTCAG GGCCGGCTCC AAGGAGGCGG CGTCCGGGAA GGCGGATGGC CACGCAGCCA
181CCCTGGTGAT GAAGCTGCAG CTGTTCATCC AAGAGGTGAA CCACGCCGTG GAGGAAACAA
241GTCACCAAGC TCTCCAGAAC ATGCCCAAAG TGCTCCGTGA TGTTGAAGCC CTAAAACAGG
301AGGCATCTTT CCTGAAAGAA CAGATGATTC TTGTCAAGGA GGACATTAAA AAATTTGAAC
361AGGACACATC TCAATCCATG CAGGTGTTGG TAGAAATTGA CCAAGTGAAG TCCAGAATGC
421AACTTGCTGC CGAATCTCTT CAGGAAGCAG ATAAGTGGAG CACGTTGAGC GCCGATATTG
481AGGAGACATT TAAGACTCAG GACATAGCTG TGATTTCTGC CAAGCTAACA GGTATGCAGA
541ACAGCTTAAT GATGCTTGTT GATACACCAG ACTACTCAGA AAAGTGTGTG CACTTGGAGG
601CACTGAAGAA CAGGCTGGAG GCCCTAGCCA GTCCACAGAT TGTAGCGGCA TTCACCTCTC
661AGGCTGTAGA TCAGTCCAAA GTGTTTGTGA AGGTGTTTAC TGAAATTGAC CGGATGCCCC
721AGCTCCTGGC CTACTACTAC AAGTGTCACA AGGTGCAGCT TTTAGCAGCC TGGCAAGAGC
781TGTGTCAAAG TGACCTATCC CTGGACCGGC AGCTTACCGG ACTCTATGAT GCCTTGCTTG
841GTGCTTGGCA CACACAAATC CAGTGGGCTA CACAGGTTTT CCAGAAGCCC CACGAGGTGG
901TAATGGTGCT GCTGATTCAG ACCCTGGGGG CCCTCATGCC CTCGCTGCCC TCCTGCCTCA
961GCAACGGCGT GGAGAGGGCA GGGCCCGAGC AGGAGCTCAC CAGGCTGCTG GAGTTCTACG
1021ACGCCACCGC CCACTTCGCC AAGGGCTTGG AGATGGCACT GCTCCCCCAC CTACATGAAC
1081ACAATCTGGT AAAAGTCACG GAGCTGGTGG ATGCTGTGTA TGATCCATAC AAACCCTACC
1141AGCTGAAGTA TGGCGACATG GAAGAGAGCA ACCTCCTCAT CCAGATGAGT GCTGTGCCTC
1201TGGAGCATGG GGAAGTGATT GACTGTGTGC AGGAGCTGAG CCACTCCGTG AACAAGCTGT
1261TTGGTCTGGC GTCTGCAGCC GTTGACAGAT GCGTCAGATT CACCAATGGC CTGGGGACCT
1321GCGGCCTGTT GTCAGCCCTG AAATCCCTCT TTGCCAAGTA TGTGTCTGAT TTCACCAGCA
1381CTCTCCAGTC CATACGAAAG AAGTGCAAAC TGGACCACAT TCCTCCCAAC TCCCTCTTCC
1441AGGAAGATTG GACGGCTTTT CAGAACTCCA TTAGGATAAT AGCCACCTGT GGAGAGCTTT
1501TGCGGCATTG TGGGGACTTC GAGCAGCAGC TAGCCAACAG GATTTTGTCC ACAGCTGGGA
1561AGTATCTATC TGATTCCTGC AGCCCCCGGA GCCTGGCTGG TTTTCAGGAG AGCATCTTGA
1621CAGACAAGAA GAACTCTGCC AAGAACCCAT GGCAAGAATA TAATTACCTC CAGAAAGATA
1681ACCCTGCTGA ATATGCCAGT TTAATGGAAA TACTTTATAC CCTTAAGGAA AAAGGGTCAA
1741GCAACCACAA CCTGCTGGCT GCACCTCGAG CAGCGCTGAC TCGGCTTAAC CAGCAGGCCC
1801ACCAGCTGGC TTTCGATTCC GTGTTCCTGC GCATCAAACA ACAGCTGTTG CTTATTTCGA
1861AGATGGACAG CTGGAATACG GCTGGCATCG GAGAAACCCT CACAGATGAA CTGCCCGCCT
1921TTAGTCTCAC CCCTCTCGAG TACATCAGCA ACATCGGGCA GTACATCATG TCCCTCCCCC
1981TGAATCTTGA GCCATTTGTG ACTCAGGAGG ACTCTGCCTT AGAGTTGGCA TTGCACGCTG
2041GAAAGCTGCC ATTTCCTCCT GAGCAGGGGG ATGAATTGCC CGAGCTGGAC AACATGGCTG
2101ACAACTGGCT GGGCTCGATC GCCAGAGCCA CAATGCAGAC CTACTGTGAT GCGATCCTAC
2161AGATCCCTGA GCTGAGCCCA CACTCTGCCA AGCAGCTGGC CACTGACATC GACTATCTGA
2221TCAACGTGAT GGATGCCCTG GGCCTGCAGC CGTCCCGCAC CCTCCAGCAC ATCGTGACGC
2281TACTGAAGAC CAGGCCTGAG GACTATAGAC AGGTCAGCAA AGGCCTGCCC CGTCGCCTGG
2341CCACCACCGT GGCCACCATG CGGAGTGTGA ATTACTGCCC AACTTTCTTG TACAAAGTtg
2401gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)