Construct: ORF ccsbBroadEn_04565
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011780.1_s300c1, BRDN0000395728
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COG7 (91949)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91949 | COG7 | component of oligomeric gol... | NM_153603.4 | 100% | 100% | |
| 2 | human | 91949 | COG7 | component of oligomeric gol... | XM_017023870.1 | 91.5% | 91.5% | 0_1ins195 |
| 3 | human | 91949 | COG7 | component of oligomeric gol... | XR_429680.2 | 75.1% | 1_221del;2367_2681del;2847_3073del | |
| 4 | human | 91949 | COG7 | component of oligomeric gol... | XR_002957852.1 | 72.5% | 1_221del;2367_2784del;2950_3186del | |
| 5 | mouse | 233824 | Cog7 | component of oligomeric gol... | NM_001033318.3 | 88.1% | 92.4% | (many diffs) |
| 6 | mouse | 233824 | Cog7 | component of oligomeric gol... | XM_006507699.2 | 86.7% | 91% | (many diffs) |
| 7 | mouse | 233824 | Cog7 | component of oligomeric gol... | XM_006507700.2 | 84.2% | 88.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2376
- ORF length:
- 2310
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CTTCTCCAAG TTCCTGGCAG ACGACTTCGA CGTGAAGGAG TGGATCAATG 121 CGGCCTTCAG GGCCGGCTCC AAGGAGGCGG CGTCCGGGAA GGCGGATGGC CACGCAGCCA 181 CCCTGGTGAT GAAGCTGCAG CTGTTCATCC AAGAGGTGAA CCACGCCGTG GAGGAAACAA 241 GTCACCAAGC TCTCCAGAAC ATGCCCAAAG TGCTCCGTGA TGTTGAAGCC CTAAAACAGG 301 AGGCATCTTT CCTGAAAGAA CAGATGATTC TTGTCAAGGA GGACATTAAA AAATTTGAAC 361 AGGACACATC TCAATCCATG CAGGTGTTGG TAGAAATTGA CCAAGTGAAG TCCAGAATGC 421 AACTTGCTGC CGAATCTCTT CAGGAAGCAG ATAAGTGGAG CACGTTGAGC GCCGATATTG 481 AGGAGACATT TAAGACTCAG GACATAGCTG TGATTTCTGC CAAGCTAACA GGTATGCAGA 541 ACAGCTTAAT GATGCTTGTT GATACACCAG ACTACTCAGA AAAGTGTGTG CACTTGGAGG 601 CACTGAAGAA CAGGCTGGAG GCCCTAGCCA GTCCACAGAT TGTAGCGGCA TTCACCTCTC 661 AGGCTGTAGA TCAGTCCAAA GTGTTTGTGA AGGTGTTTAC TGAAATTGAC CGGATGCCCC 721 AGCTCCTGGC CTACTACTAC AAGTGTCACA AGGTGCAGCT TTTAGCAGCC TGGCAAGAGC 781 TGTGTCAAAG TGACCTATCC CTGGACCGGC AGCTTACCGG ACTCTATGAT GCCTTGCTTG 841 GTGCTTGGCA CACACAAATC CAGTGGGCTA CACAGGTTTT CCAGAAGCCC CACGAGGTGG 901 TAATGGTGCT GCTGATTCAG ACCCTGGGGG CCCTCATGCC CTCGCTGCCC TCCTGCCTCA 961 GCAACGGCGT GGAGAGGGCA GGGCCCGAGC AGGAGCTCAC CAGGCTGCTG GAGTTCTACG 1021 ACGCCACCGC CCACTTCGCC AAGGGCTTGG AGATGGCACT GCTCCCCCAC CTACATGAAC 1081 ACAATCTGGT AAAAGTCACG GAGCTGGTGG ATGCTGTGTA TGATCCATAC AAACCCTACC 1141 AGCTGAAGTA TGGCGACATG GAAGAGAGCA ACCTCCTCAT CCAGATGAGT GCTGTGCCTC 1201 TGGAGCATGG GGAAGTGATT GACTGTGTGC AGGAGCTGAG CCACTCCGTG AACAAGCTGT 1261 TTGGTCTGGC GTCTGCAGCC GTTGACAGAT GCGTCAGATT CACCAATGGC CTGGGGACCT 1321 GCGGCCTGTT GTCAGCCCTG AAATCCCTCT TTGCCAAGTA TGTGTCTGAT TTCACCAGCA 1381 CTCTCCAGTC CATACGAAAG AAGTGCAAAC TGGACCACAT TCCTCCCAAC TCCCTCTTCC 1441 AGGAAGATTG GACGGCTTTT CAGAACTCCA TTAGGATAAT AGCCACCTGT GGAGAGCTTT 1501 TGCGGCATTG TGGGGACTTC GAGCAGCAGC TAGCCAACAG GATTTTGTCC ACAGCTGGGA 1561 AGTATCTATC TGATTCCTGC AGCCCCCGGA GCCTGGCTGG TTTTCAGGAG AGCATCTTGA 1621 CAGACAAGAA GAACTCTGCC AAGAACCCAT GGCAAGAATA TAATTACCTC CAGAAAGATA 1681 ACCCTGCTGA ATATGCCAGT TTAATGGAAA TACTTTATAC CCTTAAGGAA AAAGGGTCAA 1741 GCAACCACAA CCTGCTGGCT GCACCTCGAG CAGCGCTGAC TCGGCTTAAC CAGCAGGCCC 1801 ACCAGCTGGC TTTCGATTCC GTGTTCCTGC GCATCAAACA ACAGCTGTTG CTTATTTCGA 1861 AGATGGACAG CTGGAATACG GCTGGCATCG GAGAAACCCT CACAGATGAA CTGCCCGCCT 1921 TTAGTCTCAC CCCTCTCGAG TACATCAGCA ACATCGGGCA GTACATCATG TCCCTCCCCC 1981 TGAATCTTGA GCCATTTGTG ACTCAGGAGG ACTCTGCCTT AGAGTTGGCA TTGCACGCTG 2041 GAAAGCTGCC ATTTCCTCCT GAGCAGGGGG ATGAATTGCC CGAGCTGGAC AACATGGCTG 2101 ACAACTGGCT GGGCTCGATC GCCAGAGCCA CAATGCAGAC CTACTGTGAT GCGATCCTAC 2161 AGATCCCTGA GCTGAGCCCA CACTCTGCCA AGCAGCTGGC CACTGACATC GACTATCTGA 2221 TCAACGTGAT GGATGCCCTG GGCCTGCAGC CGTCCCGCAC CCTCCAGCAC ATCGTGACGC 2281 TACTGAAGAC CAGGCCTGAG GACTATAGAC AGGTCAGCAA AGGCCTGCCC CGTCGCCTGG 2341 CCACCACCGT GGCCACCATG CGGAGTGTGA ATTACTGCCC AACTTTCTTG TACAAAGTtg 2401 gcattataag aaagcattgc ttatcaattt gttgcaacga ac