Construct: ORF ccsbBroadEn_04596
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001384.1_s300c1, BRDN0000385323
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OLFM2 (93145)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93145 | OLFM2 | olfactomedin 2 | NM_058164.4 | 100% | 100% | |
| 2 | human | 93145 | OLFM2 | olfactomedin 2 | NM_001304347.2 | 93.7% | 90.8% | (many diffs) |
| 3 | human | 93145 | OLFM2 | olfactomedin 2 | NM_001304348.2 | 82.8% | 82.8% | 0_1ins234 |
| 4 | mouse | 244723 | Olfm2 | olfactomedin 2 | XM_006510294.3 | 88.2% | 96.4% | (many diffs) |
| 5 | mouse | 244723 | Olfm2 | olfactomedin 2 | NM_173777.3 | 84.5% | 93.4% | (many diffs) |
| 6 | mouse | 244723 | Olfm2 | olfactomedin 2 | XM_006510293.3 | 83% | 89% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1428
- ORF length:
- 1362
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG GCCGCTCACG GTCCCGCCGC CGCTGCTGCT GCTGCTGTGC TCAGGCCTGG 121 CCGGACAGAC TCTCTTCCAG AACCCAGAAG AGGGCTGGCA GCTGTACACC TCAGCCCAGG 181 CCCCTGACGG GAAATGCATC TGCACGGCCG TGATCCCAGC GCAGAGTACC TGCTCTCGAG 241 ATGGCAGGAG TCGGGAGCTG CGGCAACTGA TGGAGAAGGT CCAGAACGTC TCCCAGTCCA 301 TGGAGGTCCT TGAGTTGCGG ACGTATCGCG ACCTCCAGTA TGTACGCGGC ATGGAGACCC 361 TCATGCGGAG CCTGGATGCG CGGCTCCGGG CAGCTGATGG GTCCCTCTCG GCCAAGAGCT 421 TCCAGGAGCT GAAGGACAGG ATGACGGAAC TGTTGCCCCT GAGCTCGGTC CTGGAGCAGT 481 ACAAGGCAGA CACGCGGACC ATTGTACGCT TGCGGGAGGA GGTGAGGAAT CTCTCCGGCA 541 GTCTGGCGGC CATTCAGGAG GAGATGGGTG CCTACGGGTA TGAGGACCTG CAGCAACGGG 601 TGATGGCCCT GGAGGCCCGG CTCCACGCCT GCGCCCAGAA GCTGGGCTGT GGGAAGCTGA 661 CCGGGGTCAG TAACCCCATC ACCGTTCGGG CCATGGGGTC CCGCTTCGGC TCCTGGATGA 721 CTGACACGAT GGCCCCCAGT GCGGATAGCC GGGTCTGGTA CATGGATGGC TATTACAAAG 781 GCCGCCGGGT CCTGGAGTTC CGTACCCTGG GAGACTTCAT CAAAGGCCAG AACTTTATCC 841 AGCACCTGCT GCCCCAGCCG TGGGCGGGCA CGGGCCACGT GGTGTACAAC GGCTCCCTGT 901 TCTATAACAA GTACCAGAGC AACGTGGTGG TCAAATACCA CTTCCGCTCG CGCTCTGTGC 961 TGGTGCAGAG GAGCCTCCCG GGCGCCGGTT ACAACAACAC CTTCCCCTAC TCCTGGGGCG 1021 GCTTCTCCGA CATGGACTTC ATGGTGGACG AGAGCGGGCT CTGGGCTGTG TACACCACCA 1081 ACCAGAACGC GGGCAACATC GTGGTCAGCC GGCTGGACCC GCACACCCTC GAGGTCATGC 1141 GGTCCTGGGA CACCGGCTAC CCCAAGCGCA GCGCTGGCGA GGCCTTCATG ATCTGCGGTG 1201 TGCTCTACGT GACCAACTCC CACCTGGCTG GGGCCAAGGT CTACTTCGCC TATTTTACCA 1261 ACACGTCCAG TTACGAGTAC ACGGACGTGC CCTTCCACAA CCAGTATTCC CACATCTCGA 1321 TGCTGGATTA CAACCCCCGG GAGCGCGCCC TCTATACCTG GAACAACGGC CACCAGGTGC 1381 TCTACAATGT CACCCTGTTT CACGTCATCA GCACCTCTGG GGACCCCTGC CCGACTTTCT 1441 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac