Construct: ORF ccsbBroadEn_04693
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001723.1_s300c1, BRDN0000456705
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF526 (116115)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 116115 | ZNF526 | zinc finger protein 526 | NM_001314033.3 | 100% | 100% | |
| 2 | human | 116115 | ZNF526 | zinc finger protein 526 | NM_133444.3 | 100% | 100% | |
| 3 | mouse | 210172 | Zfp526 | zinc finger protein 526 | NM_175436.5 | 82.7% | 86.5% | (many diffs) |
| 4 | mouse | 210172 | Zfp526 | zinc finger protein 526 | XM_006539715.3 | 82.7% | 86.5% | (many diffs) |
| 5 | mouse | 210172 | Zfp526 | zinc finger protein 526 | XM_006539716.2 | 82.7% | 86.5% | (many diffs) |
| 6 | mouse | 210172 | Zfp526 | zinc finger protein 526 | XM_006539713.3 | 79% | 82.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2076
- ORF length:
- 2010
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGAGGTGGTG GCTGAGGTGG CCGAGATGCC AACACAGATG TCACCAGGGG 121 CAGTGGAGAT GTCAACACCT ATGTCGGCAG AGATGATGGA GATGTCAACA GAAGTGACTG 181 AGATGACACC TGGGGAGGCC CTTGCCTCAT CCCTCTTCTT CCAGCATCAC CAGTTCATGT 241 GCTCTGAGTG TGGCAGCCTC TATAACACAC TGGAGGAAGT CCTCTCACAC CAGGAGCAGC 301 ACATGCTTGC TGTCTCAGAG GAGGAGGCAC TGACCACACA GAATGTTGGC CTGGAGCCGG 361 AGCTGGTGCC GGGTGCTGAG GGGCCCTTCC AGTGTGGTGA ATGCAGCCAG CTCATCCTCT 421 CCCCTGGGGA GCTCCTGGCC CACCAGGATG CCCACCTCCG AGAGTCTGCA AACCAGATCC 481 AATACCAGTG CTGGGACTGC CAGGAGCTGT TCCCCTCGCC CGAGCTGTGG GTGGCTCATC 541 GAAAGGCCCA GCACCTTTCT GCTACGGTAG CTGAGCCACC AGTGCCACCT CCTTTGCCTC 601 CCCCAACACC ACTGCCTCCA CCTTCTCCCC CATCCGAAGT CAAGATGGAG CCCTATGAGT 661 GTCCTGAGTG CTCTACCCTC TGCGCCACCC CTGAGGAGTT CTTGGAGCAT CAGGGCACCC 721 ACTTTGACTC CCTAGAGAAA GAGGAGCGCA ATGGGTTGGA GGAGGAGGAA GAGGACGATG 781 AGGAGGATGA AGAAGATGAT GAAGAGATGG AGGATGAGGA GGCCATGGCA GAGGTCGGTG 841 ATGATGCTGT GGGAGGTGAC GAGTCCACAG CTGGCTGGGC TCAGGGCTGC GGGGACTGTC 901 CCCAGCACCA GCCCTCAGCA GGGGCTCGCC GGCAACACCG GCGGACGGCT CACAGCCCGG 961 CATCTGCCAC CCACCCCTTC CACTGCAGCC AGTGTCAGCG CAGTTTCAGC TCCGCCAACC 1021 GGCTGCAGGC TCATGGGCGG GCCCATGTTG GTGGCACACA TGAGTGTACA ACCTGCTCCA 1081 AGGTCTTCAA GAAAGCAGCA TCGCTTGAGC AGCACTTGCG GCTGCATCGC GGGGAAGCCC 1141 GCTACCTCTG TGTAGACTGT GGCCGCGGCT TTGGCACAGA ACTCACGTTG GTGGCTCACC 1201 GGCGGGCCCA CACTGCCAAC CCATTGCATC GCTGTCGTTG CGGCAAGACG TTCAGCAACA 1261 TGACCAAGTT CCTCTACCAC CGGCGCACTC ACGCCGGCAA AAGCGGGGCA CCTCCCACAG 1321 GAGCAACAGC TCCCCCAGCT CCAGCGGAGC CCACCCCTCC ACCACCACCC CCTGCCCCAC 1381 CTGCCCAGCT GCCCTGCCCA CAGTGCTCCA AGTCCTTTGC CTCAGCTTCC CGGCTGTCCC 1441 GGCACCGGCG TGCAGTACAC GGGCCCCCTG AACGGCGTCA CCGCTGTGGG GTTTGTGGCA 1501 AGGGCTTCAA GAAGCTGATC CACGTGCGCA ACCACCTGCG GACACACACG GGTGAGAGGC 1561 CCTTCCAGTG CCACTCATGT GGCAAGACCT TTGCTTCTTT GGCCAACCTC AGCCGCCACC 1621 AGCTGACCCA TACGGGTGCA CGTCCCTACC AATGCCTGGA CTGTGGCAAG CGCTTCACAC 1681 AGAGCTCCAA CCTGCAGCAG CACCGGCGGT TGCACTTGCG GCCAGTCGCC TTTGCCCGCG 1741 CCCCCCGCCT CCCCATCACT GGTCTCTACA ACAAGAGTCC CTACTACTGC GGGACTTGTG 1801 GCCGCTGGTT CCGCGCCATG GCGGGCTTGC GACTGCATCA GCGGGTCCAT GCCCGAGCTC 1861 GGACTTTGAC GCTACAGCCT CCCAGATCAC CATCTCCTGC CCCACCCCCA CCTCCAGAGC 1921 CTCAACAGAC TATCATGTGC ACAGAGCTGG GGGAGACCAT CGCCATCATT GAGACATCCC 1981 AGCCACTGGC GCTTGAGGAC ACCCTGCAGC TGTGCCAGGC TGCACTGGGG GCCAGTGAAG 2041 CAGGCGGGCT CTTGCAGTTG GACACGGCCT TCGTGTGCCC AACTTTCTTG TACAAAGTTG 2101 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac