Construct: ORF ccsbBroadEn_04707
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011208.1_s300c1, BRDN0000388765
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LYPD1 (116372)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 116372 | LYPD1 | LY6/PLAUR domain containing 1 | NM_144586.7 | 100% | 100% | |
| 2 | human | 116372 | LYPD1 | LY6/PLAUR domain containing 1 | NM_001321234.2 | 89.1% | 87.2% | (many diffs) |
| 3 | human | 116372 | LYPD1 | LY6/PLAUR domain containing 1 | NM_001077427.4 | 63.1% | 63.1% | 0_1ins156 |
| 4 | human | 116372 | LYPD1 | LY6/PLAUR domain containing 1 | NM_001321235.2 | 63.1% | 63.1% | 0_1ins156 |
| 5 | human | 116372 | LYPD1 | LY6/PLAUR domain containing 1 | XM_011510546.3 | 53.9% | 53.9% | 0_1ins195 |
| 6 | mouse | 72585 | Lypd1 | Ly6/Plaur domain containing 1 | NM_145100.4 | 89.5% | 93.6% | (many diffs) |
| 7 | mouse | 72585 | Lypd1 | Ly6/Plaur domain containing 1 | XM_017312443.1 | 80% | 80.8% | (many diffs) |
| 8 | mouse | 72585 | Lypd1 | Ly6/Plaur domain containing 1 | NM_001311089.1 | 56% | 58.1% | (many diffs) |
| 9 | mouse | 72585 | Lypd1 | Ly6/Plaur domain containing 1 | NM_001311090.1 | 56% | 58.1% | (many diffs) |
| 10 | mouse | 72585 | Lypd1 | Ly6/Plaur domain containing 1 | XM_006529885.3 | 56% | 58.1% | (many diffs) |
| 11 | mouse | 72585 | Lypd1 | Ly6/Plaur domain containing 1 | XM_011248088.2 | 43.3% | 49.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 489
- ORF length:
- 423
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TCGGCATGTG GGTCCTAGGC ATCGCGGCAA CTTTTTGCGG ATTGTTCTTG CTTCCAGGCT 121 TTGCGCTGCA AATCCAGTGC TACCAGTGTG AAGAATTCCA GCTGAACAAC GACTGCTCCT 181 CCCCCGAGTT CATTGTGAAT TGCACGGTGA ACGTTCAAGA CATGTGTCAG AAAGAAGTGA 241 TGGAGCAAAG TGCCGGGATC ATGTACCGCA AGTCCTGTGC ATCATCAGCG GCCTGTCTCA 301 TCGCCTCTGC CGGGTACCAG TCCTTCTGCT CCCCAGGGAA ACTGAACTCA GTTTGCATCA 361 GCTGCTGCAA CACCCCTCTT TGTAACGGGC CAAGGCCCAA GAAAAGGGGA AGTTCTGCCT 421 CGGCCCTCAG GCCAGGGCTC CGCACCACCA TCCTGTTCCT CAAATTAGCC CTCTTCTCGG 481 CACACTGCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 541 tttgttgcaa cgaac