Transcript: Human XM_011510546.3

PREDICTED: Homo sapiens LY6/PLAUR domain containing 1 (LYPD1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LYPD1 (116372)
Length:
2058
CDS:
629..859

Additional Resources:

NCBI RefSeq record:
XM_011510546.3
NBCI Gene record:
LYPD1 (116372)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011510546.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244779 TCCAGGCTTTGCGCTGCAAAT pLKO_005 328 5UTR 100% 10.800 15.120 N LYPD1 n/a
2 TRCN0000244778 AGCATGAGAACACAGTAAATG pLKO_005 1850 3UTR 100% 13.200 9.240 N LYPD1 n/a
3 TRCN0000257019 TTCAAGACATGTGTCAGAAAG pLKO_005 429 5UTR 100% 10.800 7.560 N LYPD1 n/a
4 TRCN0000175272 CATGTGTCAGAAAGAAGTGAT pLKO.1 436 5UTR 100% 4.950 3.465 N Lypd1 n/a
5 TRCN0000257027 ATTGTGAATTGCACGGTGAAC pLKO_005 407 5UTR 100% 4.050 2.835 N LYPD1 n/a
6 TRCN0000172235 CCAGGGAAACTGAACTCAGTT pLKO.1 701 CDS 100% 0.495 0.347 N LYPD1 n/a
7 TRCN0000193888 CAGAAAGAAGTGATGGAGCAA pLKO.1 443 5UTR 100% 2.640 1.584 N Lypd1 n/a
8 TRCN0000167770 GCATGAGAACACAGTAAATAA pLKO.1 1851 3UTR 100% 15.000 10.500 N LYPD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011510546.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04707 pDONR223 100% 53.9% 53.9% None 0_1ins195 n/a
2 ccsbBroad304_04707 pLX_304 0% 53.9% 53.9% V5 0_1ins195 n/a
3 TRCN0000472745 CTGCCTTCCTTTAATCGCCCGGGA pLX_317 100% 53.9% 53.9% V5 0_1ins195 n/a
4 TRCN0000491458 AGGGCGAGTATAGAGCTCCTGACC pLX_317 83.6% 53.9% 53.9% V5 0_1ins195 n/a
5 TRCN0000488478 TATGCCAAGTCCGTCCATCTTCCA pLX_317 86.9% 53.9% 53.9% V5 (not translated due to prior stop codon) 0_1ins195 n/a
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