Construct: ORF ccsbBroadEn_04751

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001825.1_s300c1, BRDN0000396058
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NEDD1 (121441)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... NM_001135176.2 100% 100%
2 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... NM_152905.4 100% 100%
3 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... NM_001135175.1 98.9% 98.9% 1_21del
4 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_005268644.2 98.9% 98.9% 1_21del
5 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... NM_001135177.2 86.5% 86.5% 0_1ins267
6 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_006719237.4 86.5% 86.5% 0_1ins267
7 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_011537903.3 86.5% 86.5% 0_1ins267
8 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_011537904.3 77.5% 76.7% (many diffs)
9 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_011537905.3 77.5% 76.7% (many diffs)
10 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_017018801.2 77.5% 76.7% (many diffs)
11 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_011537906.3 75.7% 75.3% (many diffs)
12 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_017018802.2 75.7% 75.3% (many diffs)
13 human 121441 NEDD1 NEDD1 gamma-tubulin ring co... XM_024448835.1 75.7% 75.3% (many diffs)
14 mouse 17997 Nedd1 neural precursor cell expre... NM_008682.2 85.2% 85.4% (many diffs)
15 mouse 17997 Nedd1 neural precursor cell expre... XM_006513334.1 80.4% 80.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2046
ORF length:
1980
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA GGAAAACCTC AGATTTGCTT CATCAGGAGA TGATATTAAA ATATGGGATG
121CTTCATCTAT GACATTGGTG GATAAATTCA ACCCACACAC ATCACCACAT GGAATCAGCT
181CAATATGTTG GAGCAGCAAT AATAACTTTT TAGTAACAGC ATCTTCCAGT GGCGACAAAA
241TAGTTGTCTC AAGTTGCAAA TGTAAACCTG TTCCACTTTT AGAGCTTGCT GAAGGGCAAA
301AGCAGACATG TGTCAATTTA AATTCTACAT CTATGTATTT GGTAAGCGGA GGCCTAAATA
361ACACTGTTAA TATTTGGGAT TTAAAATCAA AAAGAGTTCA TCGATCTCTT AAGGATCATA
421AAGATCAAGT AACTTGTGTA ACATACAATT GGAATGATTG CTACATTGCT TCTGGATCTC
481TTAGTGGTGA AATTATTTTA CACAGTGTAA CCACTAATTT ATCTAGTACT CCTTTTGGCC
541ATGGTAGTAA CCAGTCTGTT CGGCACTTGA AGTACTCCTT GTTTAAGAAA TCACTACTGG
601GCAGTGTTTC GGATAATGGA ATAGTAACTC TCTGGGATGT AAATAGTCAG AGTCCATACC
661ATAACTTTGA CAGTGTACAC AAAGCTCCAG CGTCAGGCAT CTGTTTTTCT CCTGTCAATG
721AATTGCTCTT TGTAACCATA GGCTTGGATA AAAGAATCAT CCTCTATGAC ACTTCAAGTA
781AGAAGCTAGT GAAAACTTTA GTGGCTGACA CTCCTCTAAC TGCGGTAGAT TTCATGCCTG
841ATGGAGCCAC TTTGGCTATT GGATCTTCCC GGGGGAAAAT ATATCAATAT GATTTAAGAA
901TGTTGAAATC ACCAGTTAAG ACCATCAGTG CTCACAAGAC ATCTGTGCAG TGTATAGCAT
961TTCAGTACTC CACTGTTCTT ACTAAGTCAA GTTTAAATAA AGGCTGTTCA AATAAGCCCA
1021CAACAGTGAA CAAACGAAGT GTTAATGTGA ATGCTGCTAG TGGAGGAGTT CAGAATTCCG
1081GAATTGTCAG AGAAGCACCT GCCACGTCCA TTGCCACAGT TCTACCACAA CCTATGACAT
1141CAGCTATGGG GAAAGGAACA GTTGCTGTTC AAGAAAAAGC AGGTTTGCCT CGAAGCATAA
1201ACACAGACAC TTTATCTAAG GAAACAGACA GTGGAAAAAA TCAGGATTTC TCCAGCTTTG
1261ATGATACTGG GAAAAGTAGT TTAGGTGACA TGTTCTCACC TATCAGAGAT GATGCTGTAG
1321TTAACAAGGG AAGTGATGAG TCCATAGGCA AAGGAGATGG CTTTGACTTT CTACCGCAGT
1381TGAACTCAGT GTTTCCTCCA AGAAAAAATC CAGTAACTTC AAGTACTTCA GTATTGCATT
1441CTAGTCCTCT TAATGTTTTT ATGGGATCTC CAGGGAAAGA GGAAAATGAA AACCGTGATC
1501TAACAGCTGA GTCTAAGAAA ATATATATGG GAAAACAGGA ATCTAAAGAC TCCTTCAAAC
1561AGTTAGCAAA GTTGGTCACA TCTGGTGCTG AAAGTGGAAA TCTAAATACC TCTCCATCAT
1621CTAACCAAAC AAGAAATTCT GAGAAATTTG AAAAGCCAGA GAATGAAATT GAAGCCCAGT
1681TGATATGTGA ACCCCCAATC AATGGATCCT CAACTCCAAA TCCAAAGATA GCATCTTCTG
1741TCACTGCTGG AGTTGCCAGT TCACTCTCAG AAAAAATAGC CGACAGCATT GGAAATAACC
1801GGCAAAATGC ACCATTGACT TCCATTCAAA TTCGTTTTAT TCAGAACATG ATACAGGAAA
1861CGTTGGATGA CTTTAGAGAA GCATGCCATA GGGACATTGT GAATTTGCAA GTGGAGATGA
1921TTAAACAGTT TCATATGCAA CTGAATGAAA TGCATTCTTT GCTGGAAAGA TACTCAGTGA
1981ATGAAGGTTT AGTGGCTGAA ATTGAAAGAC TACGAGAAGA AAACAAAAGA TTACGGGCCC
2041ACTTTTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
2101gttgcaacga ac

Download FASTA (ORF) (Full)

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