Construct: ORF ccsbBroadEn_04763
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009528.1_s300c1, BRDN0000393868
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC6B (122553)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 122553 | TRAPPC6B | trafficking protein particl... | NM_177452.4 | 100% | 100% | |
| 2 | human | 122553 | TRAPPC6B | trafficking protein particl... | NM_001079537.2 | 82.2% | 82.2% | 266_349del |
| 3 | human | 122553 | TRAPPC6B | trafficking protein particl... | XM_017020964.2 | 77.3% | 76.7% | (many diffs) |
| 4 | human | 122553 | TRAPPC6B | trafficking protein particl... | XM_011536409.2 | 58.2% | 58.2% | 0_1ins114;152_235del |
| 5 | mouse | 78232 | Trappc6b | trafficking protein particl... | NM_030057.3 | 76.1% | 81% | (many diffs) |
| 6 | mouse | 78232 | Trappc6b | trafficking protein particl... | NM_001306217.1 | 73.9% | 64.1% | (many diffs) |
| 7 | mouse | 78232 | Trappc6b | trafficking protein particl... | NM_001306218.1 | 54.2% | 58.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 456
- ORF length:
- 390
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGATGAGGCG TTGTTTTTGC TTCTCCATAA CGAGATGGTG TCTGGAGTGT 121 ACAAGTCCGC GGAGCAGGGG GAGGTGGAAA ACGGACGATG TATTACTAAG CTGGAAAACA 181 TGGGGTTTCG AGTGGGACAA GGATTGATAG AAAGGTTTAC AAAAGATACT GCAAGGTTCA 241 AGGATGAGTT AGATATCATG AAGTTCATTT GTAAAGATTT TTGGACTACG GTATTCAAGA 301 AACAAATCGA CAATCTAAGG ACAAATCATC AGTATTTAGC ATTTACGTGT GGCTTAATCA 361 GAGGTGGCTT ATCAAACTTG GGAATAAAAA GTATTGTAAC AGCTGAAGTG TCTTCAATGC 421 CTGCTTGCAA ATTTCAGGTG ATGATACAGA AGCTGTACCC AACTTTCTTG TACAAAGTtg 481 gcattataag aaagcattgc ttatcaattt gttgcaacga ac