Construct: ORF ccsbBroadEn_04776
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006389.1_s300c1, BRDN0000390037
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FOPNL (123811)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NM_144600.4 | 100% | 100% | |
| 2 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NM_001304499.2 | 87.8% | 87.8% | 224_295del |
| 3 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NM_001304500.2 | 62% | 58.6% | 27_28ins198 |
| 4 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NM_001304498.2 | 59.7% | 59.7% | 312_313ins210 |
| 5 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NM_001304497.2 | 57.4% | 57.4% | 225_226ins222 |
| 6 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NM_001304502.2 | 52.5% | 52.5% | 224_295del;384_385ins210 |
| 7 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NR_130756.2 | 22% | 1_18del;242_341del;641_2364del | |
| 8 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NR_130755.2 | 19.3% | 1_18del;244_245ins85;456_2179del | |
| 9 | human | 123811 | FOPNL | FGFR1OP N-terminal like | NR_130757.2 | 10.6% | (many diffs) | |
| 10 | mouse | 66086 | Fopnl | Fgfr1op N-terminal like | XM_017317110.1 | 54.2% | 56.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 588
- ORF length:
- 522
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GACTGTGGCA GAGTTGAAGG CTGTTTTAAA GGACACCTTG GAAAAAAAGG 121 GGGTATTAGG GCATTTAAAA GCAAGGATCC GAGCTGAAGT TTTCAATGCC CTAGATGATG 181 ACCGTGAACC CCGACCATCA TTGTCTCATG AAAACCTTCT AATTAATGAA TTAATTCGAG 241 AGTATTTAGA ATTCAACAAA TATAAGTATA CAGCATCTGT CCTCATAGCA GAATCTGGTC 301 AACCTGTAGT TCCGTTGGAC AGACAGTTTC TCATCCATGA ACTAAATGCA TTTGAAGAAT 361 CAAAGGATAA TACAATACCT CTTTTATATG GGATTTTAGC CCATTTCTTG CGTGGAACTA 421 AGGATGGCAT CCAGAATGCA TTTCTGAAAG GGCCTTCACT TCAGCCTTCA GACCCAAGTC 481 TTGGCAGACA ACCTAGTAGA AGAAAGCCAA TGGATGACCA CCTAAGAAAG GAGGAACAGA 541 AAAGTACTAA CATTGAAGAT CTTCATGTTT CTCAGGCAGT CAACAGATAC CCAACTTTCT 601 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac