Construct: ORF ccsbBroadEn_04792
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003272.1_s300c1, BRDN0000388482
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC43A2 (124935)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 124935 | SLC43A2 | solute carrier family 43 me... | NM_152346.3 | 100% | 100% | |
| 2 | human | 124935 | SLC43A2 | solute carrier family 43 me... | XM_017024177.2 | 100% | 100% | |
| 3 | human | 124935 | SLC43A2 | solute carrier family 43 me... | XM_017024178.2 | 100% | 100% | |
| 4 | human | 124935 | SLC43A2 | solute carrier family 43 me... | NM_001284498.2 | 99.3% | 99.3% | 1078_1089del |
| 5 | human | 124935 | SLC43A2 | solute carrier family 43 me... | NM_001321364.2 | 99.3% | 99.3% | 1078_1089del |
| 6 | human | 124935 | SLC43A2 | solute carrier family 43 me... | NM_001321365.2 | 99.3% | 99.3% | 1078_1089del |
| 7 | human | 124935 | SLC43A2 | solute carrier family 43 me... | XM_017024179.2 | 82.5% | 81% | 1_109del;266_267ins208 |
| 8 | human | 124935 | SLC43A2 | solute carrier family 43 me... | NM_001284499.1 | 72.8% | 72% | (many diffs) |
| 9 | human | 124935 | SLC43A2 | solute carrier family 43 me... | XR_933972.2 | 19.1% | 1_132del;1210_1211ins139;1701_8040del | |
| 10 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | NM_001199283.1 | 87.8% | 91.3% | (many diffs) |
| 11 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | NM_001199284.1 | 87.8% | 91.3% | (many diffs) |
| 12 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | NM_173388.2 | 87.8% | 91.3% | (many diffs) |
| 13 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532827.3 | 87.8% | 91.3% | (many diffs) |
| 14 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532819.3 | 87.2% | 90.7% | (many diffs) |
| 15 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532820.3 | 87.2% | 90.7% | (many diffs) |
| 16 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532821.3 | 87.2% | 90.7% | (many diffs) |
| 17 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532822.3 | 87.2% | 90.7% | (many diffs) |
| 18 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532823.3 | 87.2% | 90.7% | (many diffs) |
| 19 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532824.3 | 87.2% | 90.7% | (many diffs) |
| 20 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532825.3 | 87.2% | 90.7% | (many diffs) |
| 21 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532826.3 | 87.2% | 90.7% | (many diffs) |
| 22 | mouse | 215113 | Slc43a2 | solute carrier family 43, m... | XM_006532828.2 | 70.4% | 72.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1773
- ORF length:
- 1707
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACATAAAAG 61 TTGGCATGGC GCCCACCCTG GCCACTGCCC ATCGGCGCCG CTGGTGGATG GCCTGCACGG 121 CCGTGCTGGA GAACCTCCTC TTCTCGGCAG TCCTCCTGGG CTGGGGCTCG CTGCTCATCA 181 TGCTCAAGTC AGAGGGCTTT TACTCCTACC TGTGTACCGA GCCAGAGAAT GTCACCAATG 241 GCACAGTGGG CGGCACAGCA GAGCCGGGGC ACGAGGAGGT GAGCTGGATG AACGGCTGGC 301 TCAGCTGCCA GGCCCAGGAC GAGATGCTAA ATTTGGCCTT CACTGTGGGC TCCTTTCTGC 361 TCAGTGCCAT CACCCTGCCC CTGGGTATCG TCATGGACAA GTATGGCCCG AGGAAGCTCA 421 GGCTGCTGGG CAGCGCCTGC TTCGCGGTTT CCTGCTTGCT GATTGCGTAC GGAGCAAGTA 481 AACCAAACGC TCTCTCCGTG CTCATCTTCA TCGCCCTGGC TCTGAATGGC TTTGGTGGGA 541 TGTGTATGAC CTTCACCTCA TTAACACTGC CCAACATGTT CGGCGACCTT CGGTCCACGT 601 TTATTGCCTT GATGATTGGG TCCTACGCCT CCTCGGCAGT CACCTTTCCA GGAATCAAGC 661 TCATCTATGA TGCTGGTGTC TCCTTCATCG TCGTCCTCGT GGTCTGGGCC GGCTGCTCCG 721 GGCTGGTTTT CCTCAACTGC TTCTTTAACT GGCCCCTTGA GCCCTTCCCG GGGCCGGAGG 781 ACATGGACTA CTCGGTGAAG ATCAAGTTCA GCTGGCTGGG CTTTGACCAC AAGATCACAG 841 GGAAGCAGTT CTACAAGCAG GTGACCACGG TGGGCCGGCG CCTGAGTGTG GGCAGCTCCA 901 TGAGGAGTGC CAAGGAGCAG GTGGCGCTGC AGGAGGGCCA CAAGCTGTGC CTGTCCACCG 961 TCGACCTGGA GGTGAAGTGC CAGCCGGATG CCGCAGTGGC CCCCTCCTTC ATGCACAGCG 1021 TGTTCAGCCC CATCCTGCTG CTCAGCCTGG TCACCATGTG CGTCACGCAG CTGCGGCTCA 1081 TCTTCTACAT GGGGGCTATG AACAACATCC TCAAGTTCCT GGTCAGCGGC GACCAGAAGA 1141 CAGTTGGCCT CTACACCTCC ATCTTCGGCG TGCTCCAGCT GCTGTGCCTG CTGACGGCCC 1201 CCGTCATTGG CTACATCATG GACTGGAGGC TGAAGGAGTG TGAAGACGCC TCCGAGGAGC 1261 CCGAGGAGAA AGACGCCAAC CAAGGCGAGA AGAAAAAGAA GAAGCGGGAC CGGCAGATCC 1321 AGAAGATCAC TAATGCCATG CGGGCCTTCG CCTTCACCAA CCTGCTGCTC GTGGGCTTTG 1381 GGGTGACCTG CCTCATTCCC AACCTGCCTC TCCAGATCCT CTCCTTCATC CTGCACACAA 1441 TCGTGCGAGG ATTCATCCAC TCCGCTGTCG GGGGCCTGTA CGCTGCCGTG TACCCCTCCA 1501 CCCAGTTCGG CAGCCTCACG GGACTGCAGT CTCTGATCAG CGCGCTCTTC GCCCTTCTGC 1561 AGCAGCCGCT GTTTCTGGCC ATGATGGGTC CTCTCCAGGG AGACCCTCTG TGGGTGAACG 1621 TGGGGCTGCT CCTTCTCAGC CTGCTGGGCT TCTGCCTCCC GCTCTACCTG ATCTGCTACC 1681 GGCGCCAGCT GGAGCGGCAG CTGCAGCAGA GGCAGGAGGA TGACAAACTC TTCCTCAAAA 1741 TCAACGGCTC GTCCAACCAG GAGGCCTTCG TGTACCCAAC TTTCTTGTAC AAAGTtggca 1801 ttataagaaa gcattgctta tcaatttgtt gcaacgaac