Construct: ORF ccsbBroadEn_04792

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003272.1_s300c1, BRDN0000388482
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC43A2 (124935)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 124935 SLC43A2 solute carrier family 43 me... NM_152346.3 100% 100%
2 human 124935 SLC43A2 solute carrier family 43 me... XM_017024177.2 100% 100%
3 human 124935 SLC43A2 solute carrier family 43 me... XM_017024178.2 100% 100%
4 human 124935 SLC43A2 solute carrier family 43 me... NM_001284498.2 99.3% 99.3% 1078_1089del
5 human 124935 SLC43A2 solute carrier family 43 me... NM_001321364.2 99.3% 99.3% 1078_1089del
6 human 124935 SLC43A2 solute carrier family 43 me... NM_001321365.2 99.3% 99.3% 1078_1089del
7 human 124935 SLC43A2 solute carrier family 43 me... XM_017024179.2 82.5% 81% 1_109del;266_267ins208
8 human 124935 SLC43A2 solute carrier family 43 me... NM_001284499.1 72.8% 72% (many diffs)
9 human 124935 SLC43A2 solute carrier family 43 me... XR_933972.2 19.1% 1_132del;1210_1211ins139;1701_8040del
10 mouse 215113 Slc43a2 solute carrier family 43, m... NM_001199283.1 87.8% 91.3% (many diffs)
11 mouse 215113 Slc43a2 solute carrier family 43, m... NM_001199284.1 87.8% 91.3% (many diffs)
12 mouse 215113 Slc43a2 solute carrier family 43, m... NM_173388.2 87.8% 91.3% (many diffs)
13 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532827.3 87.8% 91.3% (many diffs)
14 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532819.3 87.2% 90.7% (many diffs)
15 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532820.3 87.2% 90.7% (many diffs)
16 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532821.3 87.2% 90.7% (many diffs)
17 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532822.3 87.2% 90.7% (many diffs)
18 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532823.3 87.2% 90.7% (many diffs)
19 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532824.3 87.2% 90.7% (many diffs)
20 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532825.3 87.2% 90.7% (many diffs)
21 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532826.3 87.2% 90.7% (many diffs)
22 mouse 215113 Slc43a2 solute carrier family 43, m... XM_006532828.2 70.4% 72.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1773
ORF length:
1707
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACATAAAAG
61TTGGCATGGC GCCCACCCTG GCCACTGCCC ATCGGCGCCG CTGGTGGATG GCCTGCACGG
121CCGTGCTGGA GAACCTCCTC TTCTCGGCAG TCCTCCTGGG CTGGGGCTCG CTGCTCATCA
181TGCTCAAGTC AGAGGGCTTT TACTCCTACC TGTGTACCGA GCCAGAGAAT GTCACCAATG
241GCACAGTGGG CGGCACAGCA GAGCCGGGGC ACGAGGAGGT GAGCTGGATG AACGGCTGGC
301TCAGCTGCCA GGCCCAGGAC GAGATGCTAA ATTTGGCCTT CACTGTGGGC TCCTTTCTGC
361TCAGTGCCAT CACCCTGCCC CTGGGTATCG TCATGGACAA GTATGGCCCG AGGAAGCTCA
421GGCTGCTGGG CAGCGCCTGC TTCGCGGTTT CCTGCTTGCT GATTGCGTAC GGAGCAAGTA
481AACCAAACGC TCTCTCCGTG CTCATCTTCA TCGCCCTGGC TCTGAATGGC TTTGGTGGGA
541TGTGTATGAC CTTCACCTCA TTAACACTGC CCAACATGTT CGGCGACCTT CGGTCCACGT
601TTATTGCCTT GATGATTGGG TCCTACGCCT CCTCGGCAGT CACCTTTCCA GGAATCAAGC
661TCATCTATGA TGCTGGTGTC TCCTTCATCG TCGTCCTCGT GGTCTGGGCC GGCTGCTCCG
721GGCTGGTTTT CCTCAACTGC TTCTTTAACT GGCCCCTTGA GCCCTTCCCG GGGCCGGAGG
781ACATGGACTA CTCGGTGAAG ATCAAGTTCA GCTGGCTGGG CTTTGACCAC AAGATCACAG
841GGAAGCAGTT CTACAAGCAG GTGACCACGG TGGGCCGGCG CCTGAGTGTG GGCAGCTCCA
901TGAGGAGTGC CAAGGAGCAG GTGGCGCTGC AGGAGGGCCA CAAGCTGTGC CTGTCCACCG
961TCGACCTGGA GGTGAAGTGC CAGCCGGATG CCGCAGTGGC CCCCTCCTTC ATGCACAGCG
1021TGTTCAGCCC CATCCTGCTG CTCAGCCTGG TCACCATGTG CGTCACGCAG CTGCGGCTCA
1081TCTTCTACAT GGGGGCTATG AACAACATCC TCAAGTTCCT GGTCAGCGGC GACCAGAAGA
1141CAGTTGGCCT CTACACCTCC ATCTTCGGCG TGCTCCAGCT GCTGTGCCTG CTGACGGCCC
1201CCGTCATTGG CTACATCATG GACTGGAGGC TGAAGGAGTG TGAAGACGCC TCCGAGGAGC
1261CCGAGGAGAA AGACGCCAAC CAAGGCGAGA AGAAAAAGAA GAAGCGGGAC CGGCAGATCC
1321AGAAGATCAC TAATGCCATG CGGGCCTTCG CCTTCACCAA CCTGCTGCTC GTGGGCTTTG
1381GGGTGACCTG CCTCATTCCC AACCTGCCTC TCCAGATCCT CTCCTTCATC CTGCACACAA
1441TCGTGCGAGG ATTCATCCAC TCCGCTGTCG GGGGCCTGTA CGCTGCCGTG TACCCCTCCA
1501CCCAGTTCGG CAGCCTCACG GGACTGCAGT CTCTGATCAG CGCGCTCTTC GCCCTTCTGC
1561AGCAGCCGCT GTTTCTGGCC ATGATGGGTC CTCTCCAGGG AGACCCTCTG TGGGTGAACG
1621TGGGGCTGCT CCTTCTCAGC CTGCTGGGCT TCTGCCTCCC GCTCTACCTG ATCTGCTACC
1681GGCGCCAGCT GGAGCGGCAG CTGCAGCAGA GGCAGGAGGA TGACAAACTC TTCCTCAAAA
1741TCAACGGCTC GTCCAACCAG GAGGCCTTCG TGTACCCAAC TTTCTTGTAC AAAGTtggca
1801ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)