Transcript: Human NM_001321364.2

Homo sapiens solute carrier family 43 member 2 (SLC43A2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
SLC43A2 (124935)
Length:
8145
CDS:
88..1809

Additional Resources:

NCBI RefSeq record:
NM_001321364.2
NBCI Gene record:
SLC43A2 (124935)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001321364.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245563 GACCTTCGGTCCACGTTTATT pLKO_005 607 CDS 100% 15.000 21.000 N SLC43A2 n/a
2 TRCN0000245565 ATTGCGTACGGAGCAAGTAAA pLKO_005 484 CDS 100% 13.200 18.480 N SLC43A2 n/a
3 TRCN0000168880 CGGTGCTAATTCCTTTGTAAT pLKO.1 2319 3UTR 100% 13.200 18.480 N SLC43A2 n/a
4 TRCN0000245567 CAGATCCAGAAGATCACTAAT pLKO_005 1348 CDS 100% 13.200 9.240 N SLC43A2 n/a
5 TRCN0000245564 GTATGACCTTCACCTCATTAA pLKO_005 566 CDS 100% 13.200 9.240 N SLC43A2 n/a
6 TRCN0000245566 TTCCTGTTGTCGGTGCTAATT pLKO_005 2309 3UTR 100% 13.200 9.240 N SLC43A2 n/a
7 TRCN0000172462 CATGGACTACTCGGTGAAGAT pLKO.1 804 CDS 100% 4.950 3.465 N SLC43A2 n/a
8 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 4369 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
9 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 3515 3UTR 100% 4.950 2.475 Y NPHS1 n/a
10 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 6647 3UTR 100% 4.950 2.475 Y ERAP2 n/a
11 TRCN0000136653 GCCTGACCAACATGGTGAAAT pLKO.1 7171 3UTR 100% 13.200 6.600 Y IQCC n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 6648 3UTR 100% 13.200 6.600 Y LIAS n/a
13 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 3680 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001321364.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04792 pDONR223 100% 99.3% 99.3% None 1078_1089del n/a
2 ccsbBroad304_04792 pLX_304 0% 99.3% 99.3% V5 1078_1089del n/a
3 TRCN0000468209 CCAGGAACTCCTCTGTCACCATTA pLX_317 22.8% 99.3% 99.3% V5 1078_1089del n/a
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