Construct: ORF ccsbBroadEn_04805
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011289.1_s300c1, BRDN0000387263
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC5 (126003)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 126003 | TRAPPC5 | trafficking protein particl... | NM_001042461.3 | 100% | 100% | |
| 2 | human | 126003 | TRAPPC5 | trafficking protein particl... | NM_001042462.2 | 100% | 100% | |
| 3 | human | 126003 | TRAPPC5 | trafficking protein particl... | NM_174894.3 | 100% | 100% | |
| 4 | mouse | 66682 | Trappc5 | trafficking protein particl... | NM_025701.4 | 89.1% | 98.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 630
- ORF length:
- 564
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGCGCGCTTC ACGCGCGGGA AGTCGGCGCT GCTGGAGCGC GCGCTGGCGC 121 GGCCGCGCAC CGAGGTGAGC CTGAGCGCCT TCGCACTGCT GTTCTCCGAG CTGGTACAGC 181 ACTGCCAGAG CCGCGTCTTC TCCGTGGCCG AGCTGCAGTC GCGCCTGGCC GCGCTGGGCC 241 GCCAGGTGGG CGCGCGCGTG CTGGATGCGC TGGTGGCGCG CGAAAAGGGT GCCCGGCGTG 301 AGACCAAGGT GCTAGGCGCG TTGCTCTTCG TCAAGGGCGC CGTGTGGAAG GCGCTCTTCG 361 GCAAGGAGGC GGACAAGCTG GAGCAGGCCA ACGATGACGC GCGCACCTTC TACATCATCG 421 AGCGCGAGCC GCTCATCAAC ACCTACATCT CCGTGCCCAA GGAGAACAGC ACGCTCAACT 481 GCGCCAGCTT CACGGCGGGC ATCGTGGAGG CGGTGCTCAC ACACAGCGGC TTCCCTGCCA 541 AGGTCACGGC GCACTGGCAC AAGGGCACCA CGCTCATGAT CAAGTTCGAG GAGGCAGTCA 601 TCGCTCGAGA CCGGGCCCTG GAGGGCCGCT GCCCAACTTT CTTGTACAAA GTtggcatta 661 taagaaagca ttgcttatca atttgttgca acgaac