Construct: ORF ccsbBroadEn_04927
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005039.1_s300c1, BRDN0000456989
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HDX (139324)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 139324 | HDX | highly divergent homeobox | NM_001177479.2 | 100% | 100% | |
| 2 | human | 139324 | HDX | highly divergent homeobox | NM_144657.5 | 100% | 100% | |
| 3 | human | 139324 | HDX | highly divergent homeobox | XM_011530863.2 | 100% | 100% | |
| 4 | human | 139324 | HDX | highly divergent homeobox | XM_011530864.1 | 100% | 100% | |
| 5 | human | 139324 | HDX | highly divergent homeobox | XM_017029274.1 | 100% | 100% | |
| 6 | human | 139324 | HDX | highly divergent homeobox | XM_017029275.1 | 97.3% | 97.3% | 1251_1252ins54 |
| 7 | human | 139324 | HDX | highly divergent homeobox | NM_001177478.2 | 91.5% | 91.5% | 0_1ins174 |
| 8 | human | 139324 | HDX | highly divergent homeobox | XM_006724619.1 | 91.5% | 91.5% | 0_1ins174 |
| 9 | human | 139324 | HDX | highly divergent homeobox | XM_024452336.1 | 65.9% | 62.2% | (many diffs) |
| 10 | human | 139324 | HDX | highly divergent homeobox | XR_001755652.1 | 57% | 1_118del;2189_3626del | |
| 11 | human | 139324 | HDX | highly divergent homeobox | XR_001755654.1 | 56.2% | (many diffs) | |
| 12 | human | 139324 | HDX | highly divergent homeobox | XR_001755653.1 | 55.5% | 1_118del;1369_1370ins54;2135_3572del | |
| 13 | human | 139324 | HDX | highly divergent homeobox | XR_938392.1 | 55.4% | 1_227del;2298_3735del | |
| 14 | human | 139324 | HDX | highly divergent homeobox | XR_001755651.1 | 46.7% | 1_118del;2189_4426del | |
| 15 | mouse | 245596 | Hdx | highly divergent homeobox | NM_001080549.2 | 90.7% | 90.6% | (many diffs) |
| 16 | mouse | 245596 | Hdx | highly divergent homeobox | NM_001290459.1 | 82.5% | 82.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2136
- ORF length:
- 2070
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAGTTG 61 GCACCATGAA TCTACGTTCT GTATTTACTG TAGAACAACA AAGGATTTTA CAGCGTTATT 121 ATGAAAATGG AATGACAAAT CAAAGTAAAA ATTGCTTTCA GCTCATATTA CAGTGTGCAC 181 AGGAGACTAA GCTGGACTTC AGTGTAGTCA GGACGTGGGT TGGCAATAAG AGAAGAAAGA 241 TGAGTAGTAA GAACTCTGAA TCTGGAACAG CAACAACAGG AACCTCTTTG TCAGCTCCAG 301 ACATCACAGT CAGAAATGTG GTTAATATTG CTCGACCCTC AAGCCAGCAG TCTTCTTGGA 361 CATCTGCCAA TAATGATGTC ATTGTAACTG GTATATACAG TCCAGCCAGT TCATCAAGTA 421 GGCAAGGAAC AAACAAACAT ACAGACACAC AAATTACAGA AGCACATAAA ATCCCTATTC 481 AGAAAACAGC CACTAAAAAT GATACTGAGT TTCAGTTACA CATTCCTGTC CAAAGACAAG 541 TAGCACACTG TAAAAATGCT TCCCTACTCC TAGGTGAAAA AACAATTATT TTGTCAAGAC 601 AGACAAGTGT GCTAAATGCT GGAAACTCAG TATTCAATCA CGCAAAGAAA AACTATGGAA 661 ACTCTTCAGT ACAAGCTTCT GAAATGACAG TACCTCAAAA GCCTTCTGTG TGCCACCGAC 721 CTTGTAAAAT TGAACCAGTT GGGATTCAAA GGTCATATAA GCCTGAACAC ACAGGCCCAG 781 CATTACATAA CTTATGTGGG CAAAAGCCAA CTATTAGAGA CCCTTACTGT AGAACACAAA 841 ACTTGGAAAT CCGTGAAGTG TTTTCATTGG CAGTTAGCGA TTACCCCCAG AGAATTCTGG 901 GAGGAAATGC CCCACAGAAG CCTAGCTCAG CAGAAGGAAA TTGTTTGTCC ATTGCAATGG 961 AGACTGGAGA TGCTGAGGAT GAATATGCCA GAGAGGAAGA GCTGGCATCG ATGAGAGCAC 1021 AGATACCAAG CTATTCGAGA TTTTATGAAA GTGGCAGTTC CCTTCGAGCT GAGAACCAAA 1081 GTACAACCTT GCCCGGACCA GGAAGAAATA TGCCAAATTC ACAAATGGTG AATATTAGAG 1141 ATATGTCAGA CAATGTACTG TATCAAAACA GAAACTACCA TTTGACACCA CGGACCTCAT 1201 TACATACAGC ATCTAGTACA ATGTACAGTA ATACCAATCC ATTACGGAGT AATTTTTCTC 1261 CTCATTTTGC ATCATCAAAC CAATTGAGAT TATCACAAAA CCAAAACAAT TACCAGATTT 1321 CAGGAAACCT TACTGTGCCT TGGATTACAG GGTGTTCTAG AAAAAGAGCA CTACAGGACC 1381 GCACTCAGTT CAGTGACCGA GACTTAGCCA CCCTTAAGAA GTATTGGGAC AATGGCATGA 1441 CCAGCCTGGG CTCTGTTTGT AGAGAGAAAA TTGAAGCTGT GGCAACTGAA TTAAATGTTG 1501 ACTGTGAAAT AGTTCGGACT TGGATTGGGA ATCGAAGAAG GAAATATCGT TTAATGGGGA 1561 TTGAAGTTCC ACCTCCAAGA GGAGGCCCTG CTGATTTCTC TGAGCAGCCT GAGTCTGGTT 1621 CTTTATCTGC ACTCACACCA GGAGAGGAAG CTGGGCCTGA AGTAGGAGAG GATAATGACA 1681 GAAATGATGA AGTATCCATC TGTTTGTCTG AAGGAAGCTC TCAAGAAGAG CCCAATGAAG 1741 TTGTTCCGAA TGATGCAAGG GCTCATAAGG AAGAGGACCA CCATGCAGTA ACCACAGATA 1801 ATGTGAAAAT AGAAATTATT GATGATGAAG AAAGTGACAT GATAAGTAAT TCTGAAGTAG 1861 AACAAGTAAA CTCTTTCTTG GATTATAAGA ATGAAGAAGT CAAATTCATT GAAAATGAGC 1921 TCGAGATTCA AAAGCAAAAA TACTTTAAAC TTCAGACTTT TGTTAGAAGC TTGATATTAG 1981 CAATGAAAGC TGATGATAAG GAACAACAGC AGGCACTGCT GTCAGATTTA CCTCCTGAAT 2041 TAGAGGAAAT GGATTTCAAT CATGCCTCAC TGGAGCCTGA TGATACCTCA TTCAGTGTAT 2101 CTTCTTTGTC AGAGAAAAAT GTCTCAGAAA GTTTGTTGCC AACTTTCTTG TACAAAGTTG 2161 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac