Construct: ORF ccsbBroadEn_04979

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008085.1_s300c1, BRDN0000384976
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMCO5A (145942)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 145942 TMCO5A transmembrane and coiled-co... NM_001370735.1 99.8% 100% 93T>C
2 human 145942 TMCO5A transmembrane and coiled-co... NM_152453.3 99.8% 100% 93T>C
3 human 145942 TMCO5A transmembrane and coiled-co... NM_001370736.1 95.2% 95.3% 1_42del;135T>C
4 human 145942 TMCO5A transmembrane and coiled-co... NM_001370737.1 81.2% 74% (many diffs)
5 human 145942 TMCO5A transmembrane and coiled-co... XM_011521262.2 80.2% 74.1% (many diffs)
6 human 145942 TMCO5A transmembrane and coiled-co... NM_001330255.1 78.2% 77.7% (many diffs)
7 human 145942 TMCO5A transmembrane and coiled-co... NR_163584.1 69.3% (many diffs)
8 human 145942 TMCO5A transmembrane and coiled-co... NR_163585.1 56.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
930
ORF length:
864
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AATCTCAAGA TTGGCTCAGT CAAAAAGAAA CATTATCAGT TTGAACATGG
121ACCTTGAAAG GGATACGCAG AGAATAGATG AAGCAAACCA GAAACTTCTT CTCAAAATCC
181AAGAGAGGGA AGATAAGATT CAGAGGCTGG AAAGTGAGAT CATTCAGACG CGGGGCCTGG
241TGGAAGATGA AGAGTGGGAG AAGGAGAACC GCACCACGAT GGAAAGGGAA AGAGCCTTGC
301AGGAGCTGGA GGAAGAAACA GCCAGACTTG AAAGGAAGAA TAAGACGTTG GTCCACAGTA
361TAACAGAACT TCAACAAAAG CTTACAAGGA AATCACAAAA GATAACCAAT TGTGAACAAA
421GCAGTCCAGA TGGAGCCCTA GAAGAGACAA AGGTTAAGTT ACAACAGCTG GAAGCTTCCT
481ATGCATGCCA AGAGAAGGAG CTGCTCAAGG TAATGAAGGA GTATGCATTT GTGACCCAGC
541TCTGTGAAGA TCAAGCCCTC TACATAAAGA AGTACCAGGA AACGTTGAAG AAAATAGAAG
601AAGAACTAGA GGCTCTGTTC CTTGAGAGAG AAGTATCAAA ACTCGTGAGC ATGAACCCTG
661TGGAAAAAGA GCATACCAGC CAAAATAATG AGGGTACTCC TACCCAAAAG ACAGCAAGAT
721TATTCAGTAA AAAGATTTTT TGCTGTCTCT TTTTCATCAC CCTATTTTTC ATCAGACTGC
781TGAGCTACAT GTTTTTTCAT GTAAGATTCA TAAATCCAGA TCTCCTCGTC AATGTACTGC
841CCAAGGTACT GGGCAGGAGC ACCTTGTGGA AGCTCAGATG CTTCTTCTTT CCATCTCTCA
901CACTTGAGAC AGAGGACATG TTACCCCACT GCCCAACTTT CCTGTACAAA GTtggcatta
961taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)