Construct: ORF ccsbBroadEn_05008
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003649.1_s300c1, BRDN0000387220
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF558 (148156)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 148156 | ZNF558 | zinc finger protein 558 | NM_144693.3 | 100% | 100% | |
| 2 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451386.1 | 100% | 100% | |
| 3 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451387.1 | 100% | 100% | |
| 4 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451388.1 | 100% | 100% | |
| 5 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451389.1 | 100% | 100% | |
| 6 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451390.1 | 100% | 100% | |
| 7 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451391.1 | 100% | 100% | |
| 8 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451392.1 | 100% | 100% | |
| 9 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451393.1 | 100% | 100% | |
| 10 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451394.1 | 100% | 100% | |
| 11 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_024451395.1 | 100% | 100% | |
| 12 | human | 148156 | ZNF558 | zinc finger protein 558 | NM_001304350.1 | 82.3% | 82.3% | 0_1ins213 |
| 13 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_011527703.2 | 82.3% | 82.3% | 0_1ins213 |
| 14 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_017026370.1 | 82.3% | 82.3% | 0_1ins213 |
| 15 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_017026371.1 | 82.3% | 82.3% | 0_1ins213 |
| 16 | human | 148156 | ZNF558 | zinc finger protein 558 | XM_017026372.1 | 82.3% | 82.3% | 0_1ins213 |
| 17 | human | 79230 | ZNF557 | zinc finger protein 557 | NM_001044387.2 | 80% | 73.2% | (many diffs) |
| 18 | human | 79230 | ZNF557 | zinc finger protein 557 | NM_024341.3 | 80% | 73.2% | (many diffs) |
| 19 | human | 79230 | ZNF557 | zinc finger protein 557 | NM_001044388.2 | 78.5% | 71.8% | (many diffs) |
| 20 | mouse | 72230 | Zfp558 | zinc finger protein 558 | XM_017313605.1 | 55% | 57.8% | (many diffs) |
| 21 | mouse | 72230 | Zfp558 | zinc finger protein 558 | XM_017313606.1 | 55% | 57.8% | (many diffs) |
| 22 | mouse | 72230 | Zfp558 | zinc finger protein 558 | XM_017313607.1 | 55% | 57.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1272
- ORF length:
- 1206
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCTGTCATC CTGCCCTCGA CTGCTGCTCC GTCTTCCCTG TTCCCAGCCT 121 CTCAGCAAAA AGGACACACA CAGGGCGGAG AGCTGGTTAA TGAGCTCCTG ACAAGCTGGC 181 TACGGGGCTT GGTAACCTTC GAGGATGTGG CCGTGGAGTT CACCCAGGAG GAGTGGGCGT 241 TGCTGGACCC TGCCCAAAGG ACACTGTACA GGGATGTGAT GCTGGAGAAC TGCAGGAACC 301 TGGCCTCACT AGGGTGTCGT GTTAATAAAC CCAGTCTGAT ATCCCAGTTG GAACAAGACA 361 AGAAGGTGGT GACAGAGGAA AGAGGAATTC TACCAAGCAC CTGTCCAGAT TTGGAGACTC 421 TACTTAAAGC CAAATGGTTA ACTCCTAAGA AGAATGTTTT CAGAAAAGAA CAGTCTAAAG 481 GTGTAAAAAC GGAAAGAAGT CATCGTGGAG TGAAACTCAA TGAATGTAAT CAGTGTTTTA 541 AAGTCTTCAG CACGAAATCT AACCTAACTC AGCACAAGAG AATTCATACT GGAGAAAAAC 601 CCTATGACTG TAGTCAATGT GGGAAGTCCT TCAGTAGCAG ATCTTACCTT ACTATTCATA 661 AGAGAATCCA TAATGGGGAG AAACCCTATG AATGCAATCA CTGTGGGAAA GCATTTAGTG 721 ATCCCTCATC CCTTAGACTG CATTTGAGAA TTCACACTGG AGAAAAACCC TATGAATGTA 781 ACCAGTGTTT TCACGTTTTC CGCACCAGTT GTAACCTCAA AAGCCACAAG AGGATTCACA 841 CGGGGGAGAA TCACCATGAA TGTAATCAGT GTGGAAAAGC TTTCAGCACA AGGTCCTCTC 901 TCACTGGGCA CAATAGCATT CATACAGGGG AGAAACCTTA TGAATGTCAC GATTGTGGGA 961 AAACCTTCAG GAAGAGCTCC TATCTGACAC AGCACGTAAG AACTCATACT GGAGAAAAAC 1021 CCTATGAATG TAACGAGTGT GGGAAATCCT TCAGCAGTAG CTTTTCTCTT ACTGTGCACA 1081 AGAGAATACA TACCGGAGAG AAACCCTACG AGTGCAGTGA CTGTGGAAAA GCCTTTAATA 1141 ATCTCTCAGC TGTGAAGAAA CACTTAAGAA CTCACACTGG AGAAAAACCC TATGAATGTA 1201 ATCATTGTGG GAAATCCTTC ACAAGTAACT CCTATCTTTC TGTGCACAAG AGAATACATA 1261 ATAGATGGAT ATGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1321 caatttgttg caacgaac