Construct: ORF ccsbBroadEn_05023

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013858.1_s300c1, BRDN0000389722
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNIH3 (149111)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 149111 CNIH3 cornichon family AMPA recep... NM_152495.2 100% 100%
2 human 149111 CNIH3 cornichon family AMPA recep... NM_001322305.2 90% 90% 149_150ins48
3 human 149111 CNIH3 cornichon family AMPA recep... NM_001322303.2 87.3% 76.8% (many diffs)
4 human 149111 CNIH3 cornichon family AMPA recep... NM_001322304.2 82.9% 78.6% (many diffs)
5 human 149111 CNIH3 cornichon family AMPA recep... NM_001322302.2 76.3% 67.6% (many diffs)
6 human 149111 CNIH3 cornichon family AMPA recep... NR_136288.1 24.4% (many diffs)
7 human 149111 CNIH3 cornichon family AMPA recep... NR_136290.1 23.1% (many diffs)
8 human 149111 CNIH3 cornichon family AMPA recep... NR_136289.1 22.4% (many diffs)
9 human 149111 CNIH3 cornichon family AMPA recep... NR_136297.2 22.2% (many diffs)
10 human 149111 CNIH3 cornichon family AMPA recep... NR_136292.2 21.8% (many diffs)
11 human 149111 CNIH3 cornichon family AMPA recep... NR_136295.2 21.4% (many diffs)
12 human 149111 CNIH3 cornichon family AMPA recep... NR_136296.2 21.2% (many diffs)
13 human 149111 CNIH3 cornichon family AMPA recep... NR_136291.2 21.1% (many diffs)
14 human 149111 CNIH3 cornichon family AMPA recep... NR_136294.2 19.9% (many diffs)
15 human 149111 CNIH3 cornichon family AMPA recep... NR_136293.2 19.6% (many diffs)
16 human 149111 CNIH3 cornichon family AMPA recep... NR_136287.2 14.4% 1_858del;1054_1055ins113;1226_2426del
17 mouse 72978 Cnih3 cornichon family AMPA recep... NM_001160211.1 91% 100% (many diffs)
18 mouse 72978 Cnih3 cornichon family AMPA recep... NM_028408.3 81.3% 89.3% (many diffs)
19 mouse 72978 Cnih3 cornichon family AMPA recep... XM_030243142.1 77.8% 85.5% (many diffs)
20 mouse 72978 Cnih3 cornichon family AMPA recep... NM_001160212.1 61.2% 69.3% (many diffs)
21 mouse 72978 Cnih3 cornichon family AMPA recep... XM_006496989.4 54.8% 62% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
546
ORF length:
480
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CTTCACTTTC GCTGCGTTCT GCTACATGCT GTCTCTGGTG CTGTGCGCTG
121CGCTCATCTT CTTCGCCATC TGGCACATAA TTGCCTTTGA TGAGTTAAGG ACAGATTTTA
181AGAGCCCCAT AGACCAGTGC AATCCTGTTC ATGCGAGGGA ACGGTTGAGG AACATCGAGC
241GCATCTGCTT CCTTCTGCGA AAGCTGGTGC TGCCAGAATA CTCCATCCAT AGCCTCTTCT
301GCATTATGTT CCTGTGTGCG CAAGAGTGGC TCACGCTGGG GCTGAATGTC CCTCTACTTT
361TCTATCACTT CTGGAGGTAT TTCCACTGTC CAGCAGATAG CTCAGAACTA GCCTACGACC
421CACCGGTGGT CATGAATGCC GACACTTTGA GTTACTGTCA GAAGGAGGCC TGGTGTAAGC
481TGGCCTTCTA TCTCCTCTCC TTCTTCTACT ACCTTTACTG CATGATCTAC ACTTTAGTGA
541GCTCTTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
601gttgcaacga ac

Download FASTA (ORF) (Full)