Construct: ORF ccsbBroadEn_05062
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006244.1_s300c1, BRDN0000387599
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC66A1L (152078)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 152078 | SLC66A1L | solute carrier family 66 me... | NM_001099777.3 | 100% | 100% | |
| 2 | human | 152078 | SLC66A1L | solute carrier family 66 me... | XM_017005754.1 | 88.7% | 82.6% | (many diffs) |
| 3 | human | 152078 | SLC66A1L | solute carrier family 66 me... | NM_001130002.2 | 83.2% | 78.5% | (many diffs) |
| 4 | human | 152078 | SLC66A1L | solute carrier family 66 me... | NM_001130001.2 | 69.8% | 56.4% | (many diffs) |
| 5 | human | 152078 | SLC66A1L | solute carrier family 66 me... | NM_001243729.1 | 61% | 60.1% | 213_214insATTTTTACAGCCATC;216_217ins123 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 423
- ORF length:
- 354
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAAGTCGTG GGAAACTATA GAGTCAACAC TGCAAACTCA AGCACTGATA 121 CGTCCGGAGA GCACTTGACC TGCCTTAGAA GTCAGCTCTT TGTAGCCTAC AGAAATGGAA 181 GAGTGGATGA AGCAGTCTCT CTGGGTTTTC TGGATTGCTG GATAGGTGGA GACCTGACAA 241 ATTTCAAAGG CTGCTACCTG ACTAACCAAC TGCCTATTCA GATTTTTACA GCCATCTTCG 301 ACATGAACAC GGATGTAATC ATACTCTCAC AATTCATGTA CTACAGGTTA AAGAATCAGA 361 AGAAAAAAAT TTCTGAAGAA GATCTACGGA AGGAACTTCA TTTCTGCTGT TTGCATTGGC 421 CATTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 481 gcaacgaac