Construct: ORF ccsbBroadEn_05088

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008246.1_s300c1, BRDN0000456543
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AMZ1 (155185)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 155185 AMZ1 archaelysin family metallop... NM_133463.3 99.9% 100% 1137G>A
2 human 155185 AMZ1 archaelysin family metallop... XM_011515150.2 99.9% 100% 1137G>A
3 human 155185 AMZ1 archaelysin family metallop... NM_001321766.1 65.1% 64.4% (many diffs)
4 human 155185 AMZ1 archaelysin family metallop... XM_011515151.3 59.7% 45% (many diffs)
5 human 155185 AMZ1 archaelysin family metallop... XM_017011774.2 59.7% 45% (many diffs)
6 human 155185 AMZ1 archaelysin family metallop... NM_001284355.3 59.6% 44.6% 600_601ins170;891_892ins433
7 human 155185 AMZ1 archaelysin family metallop... XM_017011776.1 54.4% 52.8% (many diffs)
8 human 155185 AMZ1 archaelysin family metallop... XM_017011775.2 54% 41.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1563
ORF length:
1494
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTGCAGTGT AGACCCGCAC AGGAGTTCAG CTTCGGGCCC CGGGCCTTGA
121AGGACGCTCT GGTCTCCACT GACGCAGCCC TGCAGCAGCT GTATGTGTCC GCCTTCTCCC
181CTGCCGAGCG GCTCTTCCTG GCCGAGGCCT ACAACCCGCA GAGGACGCTC TTCTGCACCC
241TGCTCATCCG CACGGGCTTC GACTGGCTCC TGAGCCGACC CGAGGCTCCC GAGGACTTCC
301AGACCTTCCA CGCCTCCCTG CAGCACCGGA AGCCCCGCCT GGCTCGGAAG CACATCTACC
361TACAGCCGAT AGACCTGAGC GAGGAGCCGG TGGGAAGCTC CCTGCTGCAC CAGCTGTGCA
421GCTGCACAGA GGCCTTCTTC CTGGGCCTGC GCGTCAAGTG CCTGCCGTCG GTGGCAGCCG
481CGTCCATCCG CTGCTCCTCG CGGCCCAGCC GGGACTCTGA CAGGCTCCAG CTCCACACAG
541ACGGCATCCT GTCCTTCTTG AAGAACAACA AGCCAGGGGA CGCGCTGTGT GTGCTGGGCC
601TCACACTGTC TGACCTGTAC CCCCATGAGG CCTGGAGCTT CACCTTCAGC AAGTTCCTTC
661CAGGGCACGA AGTGGGCGTC TGCAGCTTCG CCCGGTTCTC AGGGGAATTC CCGAAGTCGG
721GGCCCAGCGC CCCTGATCTG GCCCTGGTAG AGGCAGCAGC AGACGGCCCC GAGGCCCCCC
781TGCAGGACAG GGGCTGGGCC CTGTGCTTCA GTGCCCTGGG GATGGTTCAG TGCTGCAAGG
841TCACGTGCCA CGAGCTCTGC CACCTTCTGG GCCTGGGGAA CTGCCGCTGG CTCCGCTGCC
901TCATGCAGGG TGCGCTCAGC CTGGACGAGG CCCTGCGGCG GCCCCTGGAC CTCTGTCCCA
961TCTGCCTGAG GAAGCTGCAG CATGTCCTGG GTTTCAGGCT CATCGAGAGG TACCAGAGAC
1021TCTACACCTG GACTCAGGCG GTGGTGGGGA CGTGGCCCAG CCAGGAGGCG GGGGAGCCGT
1081CAGTGTGGGA GGACACCCCG CCTGCCAGCG CCGACTCGGG CATGTGCTGT GAGAGTGACT
1141CGGAGCCCGG CACCAGTGTG TCGGAGCCCC TCACCCCTGA TGCCGGGAGT CACACCTTCG
1201CCTCAGGGCC AGAGGAAGGG CTGAGCTACC TGGCAGCCTC AGAGGCTCCG CTGCCACCTG
1261GGGGCCCTGC GGAGGCCATC AAGGAGCATG AACGGTGGCT GGCCATGTGC ATCCAGGCCC
1321TGCAGCGGGA AGTGGCAGAG GAGGACCTGG TGCAGGTGGA CAGAGCCGTG GACGCCCTCG
1381ACCGCTGGGA GATGTTCACG GGCCAGCTCC CGGCCACCAG GCAGGACCCA CCCAGCAGCA
1441GGGACAGCGT GGGGCTGCGC AAGGTGCTGG GGGACAAGTT CTCCTCCCTG AGGAGGAAGC
1501TGAGTGCCCG AAAACTCGCC AGAGCAGAGT CGGCCCCCCG TCCCTGGGAT GGGGAAGAGA
1561GTTTGCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt
1621gcaacgaac

Download FASTA (ORF) (Full)