Construct: ORF ccsbBroadEn_05114

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005518.1_s300c1, BRDN0000393733
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EXD1 (161829)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 161829 EXD1 exonuclease 3'-5' domain co... NM_152596.4 99.8% 100% 1194A>G;1209C>T
2 human 161829 EXD1 exonuclease 3'-5' domain co... XM_011521299.2 97.8% 97.8% (many diffs)
3 human 161829 EXD1 exonuclease 3'-5' domain co... XM_011521301.2 95.5% 95.7% 26_94del;1263A>G;1278C>T
4 human 161829 EXD1 exonuclease 3'-5' domain co... XM_006720415.3 93.1% 92.1% (many diffs)
5 human 161829 EXD1 exonuclease 3'-5' domain co... XM_011521300.2 92.8% 92.9% 0_1ins108;1086A>G;1101C>T
6 human 161829 EXD1 exonuclease 3'-5' domain co... XM_017021970.1 92.8% 92.9% 0_1ins108;1086A>G;1101C>T
7 human 161829 EXD1 exonuclease 3'-5' domain co... XM_017021971.1 92.8% 92.9% 0_1ins108;1086A>G;1101C>T
8 human 161829 EXD1 exonuclease 3'-5' domain co... NM_001286441.2 89.3% 88.2% (many diffs)
9 human 161829 EXD1 exonuclease 3'-5' domain co... XM_011521298.2 89.3% 88.2% (many diffs)
10 human 161829 EXD1 exonuclease 3'-5' domain co... XM_011521302.2 71.6% 71.7% 0_1ins435;759A>G;774C>T
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1608
ORF length:
1542
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGACAGTGAA TTCCTAGCTT ATGTGGAACT ACTAGATGAA GTGGAACAAG
121GCTCAGTGAG AGCAAAAGCA TCTTCTGTTA GTCTACATGC AGAAAGAACC TGGATGGAGA
181AAATGAAAGT TGAAGACCTA AATGTATGTG AGCCTGCTTC TCCTGCCCCT GAAGCACCAG
241CTACCTCTCT GCTGAATGAC CTCAAGTACA GCCCATCAGA GGAAGAGGAG GTGACATACA
301CAGTCATTAA TCAATTCCAG CAGAAGTTTG GTGCTGCGAT ACTCCATATC AAGAAGCAGA
361ATGTCCTGAG TGTGGCAGCA GAAGGAGCGA ATGTATGTCG CCATGGCAAA CTGTGCTGGC
421TGCAGGTGGC CACAAATTGC CGAGTTTACT TATTTGACAT TTTCCTTCTG GGAAGTCGAG
481CTTTCCACAA TGGACTTCAG ATGATACTAG AAGACAAGAG AATTTTGAAG GTTATCCATG
541ATTGTCGTTG GCTTTCTGAT TGCCTCTCTC ATCAGTATGG AATTTTGCTG AATAATGTCT
601TTGACACACA GGTAGCAGAT GTACTTCAGT TTTCCATGGA AACGGGTGGC TATCTTCCAA
661ACTGCATCAC TACTTTGCAG GAGAGTTTAA TCAAACACCT TCAAGTAGCC CCTAAATATC
721TCTCCTTTCT AGAAAAGAGA CAAAAACTAA TTCAGGAAAA TCCAGAAGTA TGGTTCATCC
781GACCTGTTTC ACCCTCTTTA CTGAAAATTT TGGCCCTGGA AGCTACCTAC CTGTTACCCC
841TTCGCTTGGC ACTCCTAGAT GAGATGATGT CTGACCTAAC CACCCTGGTG GATGGTTACC
901TAAACACGTA TCGCGAAGGG TCTGCAGACC GGCTTGGAGG CACTGAGCCT ACATGTATGG
961AGCTGCCAGA GGAACTGCTT CAACTCAAGG ACTTCCAGAA GCAGCGCAGG GAGAAAGCTG
1021CAAGAGAATA TAGGGTGAAT GCACAGGGAC TCCTGATAAG GACAGTGCTA CAGCCAAAGA
1081AATTAGTGAC AGAGACAGCA GGGAAAGAGG AGAAAGTCAA AGGCTTCTTA TTTGGTAAAA
1141ATTTTAGGAT AGATAAAGCT CCAAGTTTTA CATCTCAAGA CTTTCACGGG GATGTGAATT
1201TACTGAAAGA AGAATCTTTG AATAAACAAG CTACAAATCC TCAACATCTA CCTCCCACGG
1261AGGAAGGGGA AACTAGTGAG GATTCCAGTA ACAAACTCAT TTGCACAAAG TCAAAGGGGT
1321CAGAGGACCA GAGAATAACT CAGAAAGAAC ACTTTATGAC ACCCAAACAT GAGTTTCAGG
1381CAAGTTTATC TTTGAAAGAG GAGACAGAAC AGTTATTGAT GGTGGAAAAC AAGGAAGATT
1441TAAAATGCAC AAAACAGGCT GTTTCAATGT CTTCCTTTCC TCAGGAAACC AGAGTGTCTC
1501CAAGTGACAC TTTTTATCCT ATCAGAAAGA CTGTGGTTTC CACACTCCCT CCCTGTCCAG
1561CCTTGGAGAA GATCGATTCC TGGATAAGTC CTTTTCTAAA TCTGCCCTAC CCAACTTTCT
1621TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)