Construct: ORF ccsbBroadEn_05127
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008498.1_s300c1, BRDN0000398060
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TOR1AIP2 (163590)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_001349931.2 | 100% | 100% | |
| 2 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_001349933.1 | 100% | 100% | |
| 3 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_022347.5 | 100% | 100% | |
| 4 | mouse | 240832 | Tor1aip2 | torsin A interacting protein 2 | NM_001160180.1 | 91% | 97.7% | (many diffs) |
| 5 | mouse | 240832 | Tor1aip2 | torsin A interacting protein 2 | NM_001160181.1 | 91% | 97.7% | (many diffs) |
| 6 | mouse | 240832 | Tor1aip2 | torsin A interacting protein 2 | NM_001160182.1 | 91% | 97.7% | (many diffs) |
| 7 | mouse | 240832 | Tor1aip2 | torsin A interacting protein 2 | NM_022329.4 | 91% | 97.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 462
- ORF length:
- 393
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTTTCAGAT AATTCACATT GCCCTGATTG TGGACAACAG TGGTTCCCTA 121 GTTTAGAACT AGGCCACTGG TTGTACCAAA CTGAACTTGT TGAAAATGAA TGTTACCAGG 181 TATTCTTAGA CCGTATTAAC AGAGCTGATT ATTGTCCTGA GTGTTATCCT GATAATCCTG 241 CTAATAGAAG CCTTGTTCTT CCTTGGTCTT TCCCACTTGA GTGGGCTCCC CAGAATCTCA 301 CCAGATGGAC CTTTGAGAAA GCTTGCCATC CATTTCTTCT GGGTCCTCCA CTGGTTAGAA 361 AAAGAATACA TGACTCTCGA GTAGCTGGTT TTAACCCTGC ATTACAGTTA ATCTTGACCA 421 GAACAGATAA AACCTTAAAC AAAAAACTGG GCCAAAACAA ATTGCCAACT TTCTTGTACA 481 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac