Transcript: Mouse NM_001160181.1

Mus musculus torsin A interacting protein 2 (Tor1aip2), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Tor1aip2 (240832)
Length:
2645
CDS:
787..1182

Additional Resources:

NCBI RefSeq record:
NM_001160181.1
NBCI Gene record:
Tor1aip2 (240832)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001160181.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216233 CTCCTCTTATATTGATCAATA pLKO.1 1723 3UTR 100% 13.200 18.480 N Tor1aip2 n/a
2 TRCN0000177117 GCTTTAATCCTGCATTACAAT pLKO.1 1106 CDS 100% 5.625 7.875 N Tor1aip2 n/a
3 TRCN0000337825 GCTTTAATCCTGCATTACAAT pLKO_005 1106 CDS 100% 5.625 7.875 N Tor1aip2 n/a
4 TRCN0000198007 CACTGGTTGTACCAAACTGAA pLKO.1 853 CDS 100% 4.950 6.930 N Tor1aip2 n/a
5 TRCN0000142737 CCTGCTAATAGAAGCCTTGTT pLKO.1 955 CDS 100% 4.950 6.930 N TOR1AIP2 n/a
6 TRCN0000181678 CCCTAGTTTAGAACTAGGGCA pLKO.1 834 CDS 100% 0.066 0.092 N Tor1aip2 n/a
7 TRCN0000337826 AGTGCTCTTCCACTAAGTTAA pLKO_005 1339 3UTR 100% 13.200 9.240 N Tor1aip2 n/a
8 TRCN0000337755 CCCTGACAATCCTGCTAATAG pLKO_005 945 CDS 100% 13.200 9.240 N Tor1aip2 n/a
9 TRCN0000177313 GCTATGGAGTTTATGACAAAT pLKO.1 2000 3UTR 100% 13.200 9.240 N Tor1aip2 n/a
10 TRCN0000178068 GCTGGCTTTAATCCTGCATTA pLKO.1 1102 CDS 100% 10.800 7.560 N Tor1aip2 n/a
11 TRCN0000177393 GAATGTTACCAAGTGTTCTTA pLKO.1 886 CDS 100% 5.625 3.938 N Tor1aip2 n/a
12 TRCN0000337824 GAATGTTACCAAGTGTTCTTA pLKO_005 886 CDS 100% 5.625 3.938 N Tor1aip2 n/a
13 TRCN0000145490 GTTGTACCAAACTGAACTTGT pLKO.1 858 CDS 100% 4.950 3.465 N TOR1AIP2 n/a
14 TRCN0000198138 CAAGAAACTTGGCCAAAGCAA pLKO.1 1158 CDS 100% 3.000 2.100 N Tor1aip2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001160181.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05127 pDONR223 100% 91% 97.7% None (many diffs) n/a
2 ccsbBroad304_05127 pLX_304 0% 91% 97.7% V5 (many diffs) n/a
3 TRCN0000468459 TCGTCAGTTTTATTACCGTTAAGC pLX_317 95.6% 91% 97.7% V5 (many diffs) n/a
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