Construct: ORF ccsbBroadEn_05134

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002875.1_s300c1, BRDN0000455677
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBXN2A (165324)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 165324 UBXN2A UBX domain protein 2A NM_181713.4 100% 100%
2 human 165324 UBXN2A UBX domain protein 2A XM_005264166.5 100% 100%
3 human 165324 UBXN2A UBX domain protein 2A XM_005264167.5 100% 100%
4 human 165324 UBXN2A UBX domain protein 2A XM_005264168.5 100% 100%
5 human 165324 UBXN2A UBX domain protein 2A XM_005264169.4 100% 100%
6 human 165324 UBXN2A UBX domain protein 2A XM_011532633.3 100% 100%
7 human 165324 UBXN2A UBX domain protein 2A XM_017003518.1 76.9% 76.8% 0_1ins178;2delT
8 human 165324 UBXN2A UBX domain protein 2A XM_024452738.1 76.9% 76.8% 0_1ins178;2delT
9 human 165324 UBXN2A UBX domain protein 2A XM_017003517.2 76.3% 74.9% (many diffs)
10 mouse 217379 Ubxn2a UBX domain protein 2A NM_145441.3 86.3% 83.9% (many diffs)
11 mouse 217379 Ubxn2a UBX domain protein 2A XR_381186.3 13.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
846
ORF length:
777
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAAAGACGTA GATAACCTCA AAAGTATAAA AGAAGAATGG GTTTGTGAAA
121CAGGATCTGA TAATCAACCT CTTGGTAATA ATCAACAATC AAATTGTGAA TATTTTGTTG
181ATAGCCTTTT TGAGGAAGCT CAGAAGGTTA GTTCCAAATG TGTGTCTCCC GCTGAACAGA
241AGAAACAGGT AGATGTAAAT ATAAAATTAT GGAAAAACGG ATTCACCGTC AACGACGATT
301TCAGAAGTTA TTCCGATGGT GCCAGTCAGC AGTTTTTGAA CTCCATCAAA AAGGGGGAAT
361TACCTTCAGA ATTACAGGGA ATTTTTGATA AAGAAGAGGT GGACGTTAAA GTTGAAGACA
421AGAAAAATGA AATATGTTTG TCTACGAAGC CTGTGTTCCA GCCCTTTTCA GGACAGGGTC
481ACAGACTAGG AAGTGCCACA CCAAAAATTG TTTCTAAAGC AAAGAATATT GAAGTTGAAA
541ATAAAAATAA TTTGTCTGCT GTTCCACTGA ACAACTTGGA ACCCATTACT AATATACAGA
601TCTGGTTGGC CAATGGAAAA AGGATTGTCC AGAAATTTAA CATTACTCAT AGAGTAAGCC
661ATATCAAAGA CTTCATTGAA AAATACCAAG GATCTCAAAG AAGTCCTCCG TTTTCCCTGG
721CAACAGCTCT TCCTGTCCTC AGGTTGCTAG ATGAGACACT CACACTGGAA GAAGCAGATT
781TACAGAATGC TGTCATCATT CAGAGACTCC AAAAAACTGC ATCTTTTAGA GAACTTTCAG
841AGCACTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
901gttgcaacga ac

Download FASTA (ORF) (Full)