Construct: ORF ccsbBroadEn_05158
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012437.1_s300c1, BRDN0000394119
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XAGE3 (170626)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 170626 | XAGE3 | X antigen family member 3 | NM_130776.1 | 100% | 100% | |
| 2 | human | 170626 | XAGE3 | X antigen family member 3 | NM_133179.3 | 100% | 100% | |
| 3 | human | 170626 | XAGE3 | X antigen family member 3 | XM_011530768.2 | 100% | 100% | |
| 4 | human | 170626 | XAGE3 | X antigen family member 3 | XM_011530769.2 | 100% | 100% | |
| 5 | human | 170626 | XAGE3 | X antigen family member 3 | XM_011530770.2 | 100% | 100% | |
| 6 | human | 139629 | XAGE-4 | XAGE-4 protein | XR_001755743.1 | 89.3% | (many diffs) | |
| 7 | human | 9502 | XAGE2 | X antigen family member 2 | NM_130777.3 | 86.4% | 72% | (many diffs) |
| 8 | human | 9502 | XAGE2 | X antigen family member 2 | XM_011530836.2 | 86.4% | 72% | (many diffs) |
| 9 | human | 170627 | XAGE5 | X antigen family member 5 | NM_130775.2 | 85.9% | 72.9% | (many diffs) |
| 10 | human | 170627 | XAGE5 | X antigen family member 5 | XM_017029320.2 | 85.9% | 72.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 399
- ORF length:
- 333
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT TTGGCGAGGA AGATCAACAT ATAGGCCTAG GCCGAGGAGA AGTGTACCAC 121 CTCCTGAGCT GATTGGGCCT ATGCTGGAGC CCGGTGATGA GGAGCCTCAG CAAGAGGAAC 181 CACCAACTGA AAGTCGGGAT CCTGCACCTG GTCAGGAGAG AGAAGAAGAT CAGGGTGCAG 241 CTGAGACTCA AGTGCCTGAC CTGGAAGCTG ATCTCCAGGA GCTGTCTCAG TCAAAGACTG 301 GGGGTGAATG TGGAAATGGT CCTGATGACC AGGGGAAGAT TCTGCCAAAA TCAGAACAAT 361 TTAAAATGCC AGAAGGAGGT GACAGGCAAC CACAGGTTTA CCCAACTTTC TTGTACAAAG 421 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac