Construct: ORF ccsbBroadEn_05230
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016154.1_s300c1, BRDN0000396165
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C11orf45 (219833)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219833 | C11orf45 | chromosome 11 open reading ... | NM_001256088.1 | 100% | 100% | |
| 2 | human | 219833 | C11orf45 | chromosome 11 open reading ... | NM_145013.2 | 100% | 100% | |
| 3 | human | 219833 | C11orf45 | chromosome 11 open reading ... | XM_011542654.2 | 100% | 100% | |
| 4 | human | 219833 | C11orf45 | chromosome 11 open reading ... | XM_011542655.2 | 100% | 100% | |
| 5 | human | 219833 | C11orf45 | chromosome 11 open reading ... | NM_001369160.1 | 86.8% | 86.8% | 133_134ins57 |
| 6 | human | 219833 | C11orf45 | chromosome 11 open reading ... | NR_045767.1 | 12.1% | 1_128del;564_3582del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 501
- ORF length:
- 435
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GACGCGGCTG GTCCTCAGTG CACACCTGAG TAGCACGACC TCTCCGCCCT 121 GGACGCACGC TGCCATCAGC TGGGAGCTGG ACAACGTGCT GATGCCTAGT CCCAGAATCT 181 GGCCCCAGGT GACTCCAACA GGCAGGTCTG CCTCTGTCAG GAGTGAGGGT AACACCTCCT 241 CACTCTGGAA TTTCTCAGCT GGGCAGGATG TGCATGCCAT AGTAACCAGA ACCTGTGAGT 301 CTGTGCTGAG CTCTGCCGTC TACACCCACG GCTGTGGCTG TGTGAGGTCT GCCACAAACA 361 TTACCTGTCA GTCCTCAGGA CAACAAAGGC AGGCGGCCCG GCAGGAAGAG GAGAACTCAA 421 TCTGCAAGGC CCATGATAGT AGAGAGGGCC GCCTGGGCTA CCCCCTCAGT GCCCATCAGC 481 CTGGTTCCGG TGGTCCTAAC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 541 attgcttatc aatttgttgc aacgaac