Transcript: Human XM_011542655.2

PREDICTED: Homo sapiens chromosome 11 open reading frame 45 (C11orf45), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
C11orf45 (219833)
Length:
3516
CDS:
87..524

Additional Resources:

NCBI RefSeq record:
XM_011542655.2
NBCI Gene record:
C11orf45 (219833)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542655.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000005600 GCCCGATTCAAGGTATGGAAT pLKO.1 2991 3UTR 100% 4.950 6.930 N C11orf45 n/a
2 TRCN0000005603 GCCATAGTAACCAGAACCTGT pLKO.1 297 CDS 100% 2.640 3.696 N C11orf45 n/a
3 TRCN0000371382 CGATGTAATGGATGCTGATTA pLKO_005 827 3UTR 100% 13.200 9.240 N C11orf45 n/a
4 TRCN0000371381 CTGATGCCTAGTCCCAGAATC pLKO_005 180 CDS 100% 10.800 7.560 N C11orf45 n/a
5 TRCN0000005604 TCAATCTGCAAGGCCCATGAT pLKO.1 438 CDS 100% 4.950 3.465 N C11orf45 n/a
6 TRCN0000005601 CCACAAACATTACCTGTCAGT pLKO.1 373 CDS 100% 2.640 1.848 N C11orf45 n/a
7 TRCN0000005602 CACCTCCTCACTCTGGAATTT pLKO.1 254 CDS 100% 13.200 7.920 N C11orf45 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542655.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05230 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05230 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000465757 TTCGTGCACGGCGTCCGCCCGGGT pLX_317 60.4% 100% 100% V5 n/a
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