Construct: ORF ccsbBroadEn_05267

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010376.1_s300c1, BRDN0000392866
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCZ1B (221960)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 221960 CCZ1B CCZ1 homolog B, vacuolar pr... NM_198097.3 100% 100%
2 human 51622 CCZ1 CCZ1 homolog, vacuolar prot... NM_015622.6 99.8% 100% 759T>C;1104C>T
3 mouse 231874 Ccz1 CCZ1 vacuolar protein traff... NM_177682.3 88.5% 95.8% (many diffs)
4 mouse 231874 Ccz1 CCZ1 vacuolar protein traff... XM_017320876.1 62.4% 67.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1512
ORF length:
1446
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGCAGCGGCG GCCGGGGCCG GGAGCGGGCC CTGGGCGGCC CAGGAGAAGC
121AGTTCCCGCC GGCGCTGCTG AGTTTCTTCA TCTACAACCC GCGCTTCGGG CCGCGCGAAG
181GACAGGAGGA AAATAAGATT TTATTTTATC ATCCAAATGA GGTAGAAAAG AATGAGAAGA
241TTAGAAATGT CGGATTGTGT GAAGCTATTG TACAGTTTAC AAGGACATTT AGCCCATCAA
301AACCTGCAAA ATCTTTACAT ACACAGAAGA ACAGACAGTT CTTCAATGAA CCAGAAGAAA
361ATTTCTGGAT GGTCATGGTT GTTCGGAATC CTATAATTGA AAAACAGAGT AAAGATGGAA
421AACCAGTTAT TGAATATCAA GAGGAGGAGT TGTTGGACAA GGTTTATAGC TCGGTGCTGC
481GGCAGTGCTA CAGCATGTAC AAGCTTTTTA ATGGTACATT TCTGAAAGCC ATGGAAGACG
541GAGGCGTCAA GCTTCTGAAA GAAAGATTAG AGAAATTCTT CCATCGGTAT TTGCAAACGC
601TACATTTGCA GTCATGTGAC CTACTTGACA TTTTTGGTGG AATCAGCTTC TTCCCGTTGG
661ATAAAATGAC TTATTTGAAA ATCCAGTCCT TTATTAATAG AATGGAGGAA AGCCTGAATA
721TAGTCAAATA CACTGCTTTT CTCTATAACG ATCAGCTCAT CTGGAGTGGA TTAGAACAAG
781ATGACATGAG AATTTTATAC AAATACCTTA CCACCTCCCT TTTCCCAAGG CACATCGAAC
841CTGAGTTAGC AGGAAGGGAT TCTCCAATAA GAGCAGAAAT GCCAGGAAAT CTTCAACACT
901ATGGAAGATT TCTTACCGGA CCCTTGAACC TCAATGATCC AGATGCAAAA TGCAGATTCC
961CCAAAATTTT TGTAAATACA GATGACACTT ATGAAGAGCT CCATTTAATC GTTTATAAGG
1021CCATGAGTGC GGCTGTGTGC TTTATGATCG ACGCCTCTGT CCACCCAACG TTGGATTTTT
1081GCCGAAGACT GGACAGCATC GTTGGGCCCC AGCTCACAGT GCTGGCCTCT GACATCTGTG
1141AACAGTTTAA CATCAACAAG AGGATGTCTG GGTCTGAGAA AGAACCCCAG TTTAAGTTTA
1201TCTACTTCAA CCACATGAAT CTCGCCGAGA AGAGCACAGT TCACATGAGG AAAACGCCCA
1261GCGTGTCGCT CACTTCCGTG CACCCGGATT TAATGAAGAT TCTCGGTGAC ATCAACAGTG
1321ACTTTACCAG AGTGGATGAA GATGAGGAGA TCATTGTGAA GGCCATGAGT GATTACTGGG
1381TTGTTGGAAA GAAGTCTGAT CGGCGGGAGC TCTATGTTAT TTTGAATCAA AAAAATGCAA
1441ACCTGATTGA AGTAAATGAA GAGGTCAAGA AACTTTGTGC AACGCAGTTC AACAACATCT
1501TCTTCTTGGA TTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1561caatttgttg caacgaac

Download FASTA (ORF) (Full)